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Bug#767912: marked as done (unblock: libghemical/3.0.0-4)

Your message dated Mon, 03 Nov 2014 17:53:06 +0100
with message-id <[🔎] 5457B2F2.6020601@thykier.net>
and subject line Re: Bug#767912: unblock: libghemical/3.0.0-4
has caused the Debian Bug report #767912,
regarding unblock: libghemical/3.0.0-4
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
767912: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767912
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: unblock

unblock libghemical/3.0.0-4

Hi,

please unblock libghemical, which will also get us ghemical back. The
3.0.0-3 upload would have been in time for the freeze, however, due to
s390x being the sole architecture on MPICH for mpi-default, a FTBFS on
it was not caught and had to be fixed in -4.

The package is now uptodate on all architectures in unstable.

I have attached the debdiff with respect to the current stable package
(3.0.0-2), which is reasonably small in my opinion.


Many thanks,

Michael

diff -Nru libghemical-3.0.0/debian/changelog libghemical-3.0.0/debian/changelog
--- libghemical-3.0.0/debian/changelog	2011-11-28 19:36:14.000000000 +0100
+++ libghemical-3.0.0/debian/changelog	2014-10-27 20:27:47.000000000 +0100
@@ -1,3 +1,36 @@
+libghemical (3.0.0-4) unstable; urgency=high
+
+  * debian/patches/fix-underlinking.patch: Use -lmpi++ instead of -lmpi_cxx.
+    Fixes FTBFS error on mpich architectures (s390x).
+
+ -- Michael Banck <mbanck@debian.org>  Mon, 27 Oct 2014 20:27:35 +0100
+
+libghemical (3.0.0-3) unstable; urgency=medium
+
+  [ Daniel Leidert (dale) ]
+  * debian/control (Uploaders): Removed myself.
+
+  [ Michael Banck ]
+  * Sync with Ubuntu (Closes: #765230).
+
+  [ Graham Inggs ]
+  * Add fix-underlinking.patch: link MPI libraries (Closes: #722162).
+  * Add debian/clean: allow package to build twice in a row.
+
+ -- Michael Banck <mbanck@debian.org>  Sun, 26 Oct 2014 15:18:26 +0100
+
+libghemical (3.0.0-2ubuntu1) trusty; urgency=medium
+
+  * Apply autoreconf for better port coverage.
+
+ -- Dimitri John Ledkov <xnox@ubuntu.com>  Sun, 22 Dec 2013 03:18:07 +0000
+
+libghemical (3.0.0-2build1) trusty; urgency=medium
+
+  * No change rebuild against libopenmpi1.6.
+
+ -- Dimitri John Ledkov <xnox@ubuntu.com>  Sun, 22 Dec 2013 02:37:55 +0000
+
 libghemical (3.0.0-2) unstable; urgency=low
 
   * debian/libghemical5.symbols: Removed again. Because there is only one
@@ -24,7 +57,6 @@
 libghemical (2.99.1-2) unstable; urgency=low
 
   [ Daniel Leidert (dale) ]
-  * NOT RELEASED YET
   * debian/compat: Bumped to dh compat level 7.
   * debian/control (Build-Depends): Bumped dh version and dropped cdbs.
     (Standards-Version): Bumped to 3.8.4.
diff -Nru libghemical-3.0.0/debian/clean libghemical-3.0.0/debian/clean
--- libghemical-3.0.0/debian/clean	1970-01-01 01:00:00.000000000 +0100
+++ libghemical-3.0.0/debian/clean	2014-10-26 15:15:37.000000000 +0100
@@ -0,0 +1,2 @@
+src/libghemicalconfig2.h
+stamp.h
diff -Nru libghemical-3.0.0/debian/control libghemical-3.0.0/debian/control
--- libghemical-3.0.0/debian/control	2011-11-27 18:28:57.000000000 +0100
+++ libghemical-3.0.0/debian/control	2014-10-26 15:11:10.000000000 +0100
@@ -2,12 +2,11 @@
 Section: science
 Priority: optional
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
-Uploaders: Michael Banck <mbanck@debian.org>,
- Daniel Leidert (dale) <daniel.leidert@wgdd.de>
+Uploaders: Michael Banck <mbanck@debian.org>
 Build-Depends: debhelper (>= 7.0.50~), gfortran, flex,
  intltool (>= 0.40.0), pkg-config (>= 0.9.0), libblas-dev,
  liblapack-dev, libmopac7-dev (>= 1.14), libsc-dev (>= 2.3.1-2),
- mesa-common-dev
+ mesa-common-dev, dh-autoreconf, libglib2.0-dev
 Standards-Version: 3.9.2
 Homepage: http://bioinformatics.org/ghemical/ghemical/
 Vcs-Browser: http://svn.debian.org/wsvn/debichem/unstable/libghemical/
diff -Nru libghemical-3.0.0/debian/patches/fix-underlinking.patch libghemical-3.0.0/debian/patches/fix-underlinking.patch
--- libghemical-3.0.0/debian/patches/fix-underlinking.patch	1970-01-01 01:00:00.000000000 +0100
+++ libghemical-3.0.0/debian/patches/fix-underlinking.patch	2014-10-27 20:22:55.000000000 +0100
@@ -0,0 +1,17 @@
+Description: Fix underlinking
+ This patch causes the the MPI libraries to be linked,
+ avoiding dpkg-shlibdeps warnings.
+Author: Graham Inggs <graham@nerve.org.za>
+Bug-Debian: http://bugs.debian.org/722162
+Last-Update: 2014-10-01
+--- a/configure.ac
++++ b/configure.ac
+@@ -148,6 +148,8 @@
+ 	REQUISITIONS="$REQUISITIONS libmopac7"
+ fi
+ 
++LIBS="$LIBS -lmpi -lmpi++"
++
+ # Checks for header files.
+ # ^^^^^^^^^^^^^^^^^^^^^^^^
+ 
diff -Nru libghemical-3.0.0/debian/patches/series libghemical-3.0.0/debian/patches/series
--- libghemical-3.0.0/debian/patches/series	2011-11-27 18:28:57.000000000 +0100
+++ libghemical-3.0.0/debian/patches/series	2014-10-26 15:15:37.000000000 +0100
@@ -0,0 +1 @@
+fix-underlinking.patch
diff -Nru libghemical-3.0.0/debian/rules libghemical-3.0.0/debian/rules
--- libghemical-3.0.0/debian/rules	2011-11-27 18:28:57.000000000 +0100
+++ libghemical-3.0.0/debian/rules	2014-10-26 15:11:10.000000000 +0100
@@ -7,7 +7,7 @@
 LDFLAGS += -Wl,--as-needed
 
 %:
-	dh $@ --parallel
+	dh $@ --parallel --with autoreconf
 
 override_dh_auto_configure:
 	dh_auto_configure -- --enable-mpqc --enable-mopac7 --disable-sctest

--- End Message ---
--- Begin Message --- 
Control: tags -1 wontfix

On 2014-11-03 14:19, Michael Banck wrote:
> Package: release.debian.org
> Severity: normal
> User: release.debian.org@packages.debian.org
> Usertags: unblock
> 
> unblock libghemical/3.0.0-4
> 
> Hi,
> 
> please unblock libghemical, which will also get us ghemical back. The
> 3.0.0-3 upload would have been in time for the freeze, however, due to
> s390x being the sole architecture on MPICH for mpi-default, a FTBFS on
> it was not caught and had to be fixed in -4.
> 
> The package is now uptodate on all architectures in unstable.
> 
> I have attached the debdiff with respect to the current stable package
> (3.0.0-2), which is reasonably small in my opinion.
> 
> 
> Many thanks,
> 
> Michael
> 

Hi Michael,

I am afraid I have to decline your request for unblocking libghemical.
The package is currently not in testing, therefore the proposed changes
do not resolve any issues affecting the coming stable release.

I realise that this may be quite frustrating to you.  However, I cannot
give you special treatment in this regard without extending the same
"courtesy" to several others.  I hope you can understand that this is
very undesirable to us as it would effectively push back the announced
freeze date.

Yours truly,
~Niels

--- End Message ---
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