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Bug#711943: marked as done (transition: openmpi)

Your message dated Sat, 8 Mar 2014 11:53:44 +0100
with message-id <20140308105344.GW17725@betterave.cristau.org>
and subject line Re: Bug#711943: transition: openmpi
has caused the Debian Bug report #711943,
regarding transition: openmpi
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
711943: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=711943
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: transition

Hello,

I would like to propose the transition of openmpi from version 1.4 => 1.6.
The ABI has changed between the two releases.
However, the MPI ABI being stable, binNMU should be enough most of (all?) the
time.
Version 1.6.4+-1~exp1 is available in experimental.

Ben file:

title = "openmpi";
is_affected = .depends ~ "libopenmpi1.3" | .depends ~ "libopenmpi1.6";
is_good = .depends ~ "libopenmpi1.6";
is_bad = .depends ~ "libopenmpi1.3";


The list of packages depending on libopenmpi1.3 is pretty long:
$ apt-rdepends -r libopenmpi1.3
  Reverse Depends: abyss (1.3.4-3)
  Reverse Depends: aces3 (3.0.6-7)
  Reverse Depends: ampliconnoise (1.25-1)
  Reverse Depends: apbs (1.3.0-2)
  Reverse Depends: blacs-mpi-test (1.1-31)
  Reverse Depends: clustalw-mpi (0.15-2)
  Reverse Depends: code-saturne-bin (3.0.1-1)
  Reverse Depends: coinor-libipopt1 (3.10.2-1.1)
  Reverse Depends: coop-computing-tools (3.5.1-2)
  Reverse Depends: cp2k (2.2.426-8)
  Reverse Depends: esys-particle (2.2.u1-2)
  Reverse Depends: feel++-apps (0.91.4-3)
  Reverse Depends: fftw2 (2.1.5-1)
  Reverse Depends: freefem++ (3.19.1-1)
  Reverse Depends: gerris-mpi (20110329-dfsg.2-1)
  Reverse Depends: getdp (2.2.0-1)
  Reverse Depends: ghemical (3.0.0-1)
  Reverse Depends: gmsh (2.7.0.dfsg-1)
  Reverse Depends: gpiv-mpi (0.6.1-2)
  Reverse Depends: gpivtools-mpi (0.6.0-3)
  Reverse Depends: gromacs-openmpi (4.5.5-2)
  Reverse Depends: hpcc (1.4.1-2)
  Reverse Depends: lammps (0~20130503.gitd2adfba-1)
  Reverse Depends: libadios-dev (1.3-11)
  Reverse Depends: libblacs-mpi1 (1.1-31)
  Reverse Depends: libboost-graph-parallel1.49.0 (1.49.0-4)
  Reverse Depends: libboost-graph-parallel1.53.0 (1.53.0-5)
  Reverse Depends: libboost-mpi-python1.49.0 (1.49.0-4)
  Reverse Depends: libboost-mpi-python1.53.0 (1.53.0-5)
  Reverse Depends: libboost-mpi1.49.0 (1.49.0-4)
  Reverse Depends: libboost-mpi1.53.0 (1.53.0-5)
  Reverse Depends: libcdi0 (1.5.4+dfsg.1-5)
  Reverse Depends: libdolfin1.0 (1.0.0-7+b1)
  Reverse Depends: libdune-grid-2.2.1 (2.2.1-2)
  Reverse Depends: libfeel++1 (0.91.4-3)
  Reverse Depends: libfftw3-mpi3 (3.3.3-5)
  Reverse Depends: libfreefem++ (3.19.1-1)
  Reverse Depends: libfreefoam1 (0.1.0+dfsg-1)
  Reverse Depends: libgfs-mpi-1.3-2 (20110329-dfsg.2-1)
  Reverse Depends: libghemical5 (3.0.0-2)
  Reverse Depends: libgmsh2 (2.7.0.dfsg-1)
  Reverse Depends: libgpiv-mpi3 (0.6.1-4)
  Reverse Depends: libhdf5-openmpi-7 (1.8.8-9.1)
  Reverse Depends: libhypre-2.8.0b (2.8.0b-1)
  Reverse Depends: libliggghts2 (2.3.2-1)
  Reverse Depends: libmed-tools (3.0.3-3)
  Reverse Depends: libmed1 (3.0.3-3)
  Reverse Depends: libmedc1 (3.0.3-3)
  Reverse Depends: libmeep-mpi-default6 (1.1.1-9+b1)
  Reverse Depends: libmeep-openmpi6 (1.1.1-8+b1)
  Reverse Depends: libmesh0.7.1 (0.7.1-2+b1)
  Reverse Depends: libmrmpi1 (1.0~20110620.dfsg-2)
  Reverse Depends: libmumps-4.10.0 (4.10.0.dfsg-3)
  Reverse Depends: libmumps-ptscotch-4.10.0 (4.10.0.dfsg-3)
  Reverse Depends: libmusic1 (1.0.7-1.2)
  Reverse Depends: libns3-3 (3.17+dfsg-1)
  Reverse Depends: liboasis3-0d (3.3.beta.dfsg.1-8+b1)
  Reverse Depends: libopenmpi-dbg (= 1.4.5-1)
  Reverse Depends: libopenmpi-dev (= 1.4.5-1)
  Reverse Depends: libparmetis3.1 (3.1.1-4)
  Reverse Depends: libpetsc3.2 (3.2.dfsg-6)
  Reverse Depends: libptscotch-5.1 (5.1.12b.dfsg-2)
  Reverse Depends: librheolef1 (6.1-2.1)
  Reverse Depends: libsc-dev (2.3.1-14)
  Reverse Depends: libsc7 (2.3.1-14)
  Reverse Depends: libscalapack-mpi1 (1.8.0-9)
  Reverse Depends: libscotch-5.1 (5.1.12b.dfsg-2)
  Reverse Depends: libsiloh5-0 (4.8-13)
  Reverse Depends: libslepc3.2 (3.2-p5-1)
  Reverse Depends: libspooles2.2 (2.2-9)
  Reverse Depends: libvtk5.10 (5.10.1-1)
  Reverse Depends: libvtk5.8 (5.8.0-13+b1)
  Reverse Depends: libxdmf2 (2.1.dfsg.1-5)
  Reverse Depends: liggghts (2.3.2-1)
  Reverse Depends: meep-mpi-default (1.1.1-9+b1)
  Reverse Depends: meep-openmpi (1.1.1-8+b1)
  Reverse Depends: mpb-mpi (1.4.2-18)
  Reverse Depends: mpqc (2.3.1-14)
  Reverse Depends: mpqc-support (2.3.1-14)
  Reverse Depends: mrbayes-mpi (3.2.1+dfsg-2)
  Reverse Depends: mumps-test (4.10.0.dfsg-3)
  Reverse Depends: music-bin (1.0.7-1.2)
  Reverse Depends: netpipe-openmpi (3.7.2-7)
  Reverse Depends: ns3 (3.17+dfsg-1)
  Reverse Depends: nwchem (6.1-6)
  Reverse Depends: oasis3 (3.3.beta.dfsg.1-8+b1)
  Reverse Depends: oasis3-examples (3.3.beta.dfsg.1-8+b1)
  Reverse Depends: octave-openmpi-ext (1.1.0-1)
  Reverse Depends: openmpi-bin (1.4.5-1)
  Reverse Depends: openmpi-checkpoint (1.4.5-1)
  Reverse Depends: openmpipython (2.9.2-4)
  Reverse Depends: otf-trace (1.10.2+dfsg-2)
  Reverse Depends: paraview (4.0.0~rc1-1)
  Reverse Depends: paraview-medreader (6.5.0-3)
  Reverse Depends: parmetis-test (3.1.1-4)
  Reverse Depends: prime-phylo (1.0.11-1)
  Reverse Depends: ptscotch (5.1.12b.dfsg-2)
  Reverse Depends: python-gmsh (2.7.0.dfsg-1)
  Reverse Depends: python-mpi4py (1.3+hg20130509-1)
  Reverse Depends: python-vtk (5.8.0-13+b1)
  Reverse Depends: python3-mpi4py (1.3+hg20130509-1)
  Reverse Depends: quantum-espresso (5.0-1)
  Reverse Depends: r-cran-rmpi (0.5-9-3)
  Reverse Depends: ray (2.1.0-1)
  Reverse Depends: regina-normal-mpi (4.93-1)
  Reverse Depends: rheolef (6.1-2.1)
  Reverse Depends: salome-gui (6.5.0-5)
  Reverse Depends: salome-kernel (6.5.0-5)
  Reverse Depends: salome-med (6.5.0-3)
  Reverse Depends: salome-paravis (6.5.0-3)
  Reverse Depends: salome-smesh (6.5.0-3)
  Reverse Depends: scalapack-mpi-test (1.8.0-9)
  Reverse Depends: scalasca (1.4.3-1)
  Reverse Depends: scotch (5.1.12b.dfsg-2)
  Reverse Depends: sfftw2 (2.1.5-1)
  Reverse Depends: starpu-contrib-examples (1.0.1-3)
  Reverse Depends: starpu-examples (1.0.1-2+b1)
  Reverse Depends: tessa-mpi (0.3.1-6+b1)
  Reverse Depends: tree-ppuzzle (5.2-7)
  Reverse Depends: valgrind-mpi (1:3.8.1-3)
  Reverse Depends: yorick-mpy-openmpi (2.2.02+dfsg-6)
  Reverse Depends: zalign (0.9.1-1)


Thanks,
Sylvestre

PS:
openmpi1.6 has been available in Debian for a while (we were trying to have
it in wheezy).
Once the transition is done, I am planning to ask for a removal.

-- System Information:
Debian Release: 7.0
  APT prefers testing
  APT policy: (600, 'testing'), (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.2.0-4-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

--- End Message ---
--- Begin Message --- 
On Wed, Dec 25, 2013 at 23:13:08 +0100, Julien Cristau wrote:

> On Tue, Jun 11, 2013 at 12:14:25 +0200, Sylvestre Ledru wrote:
> 
> > Package: release.debian.org
> > Severity: normal
> > User: release.debian.org@packages.debian.org
> > Usertags: transition
> > 
> > Hello,
> > 
> > I would like to propose the transition of openmpi from version 1.4 => 1.6.
> > The ABI has changed between the two releases.
> > However, the MPI ABI being stable, binNMU should be enough most of (all?) the
> > time.
> > Version 1.6.4+-1~exp1 is available in experimental.
> > 
> Last blocker for calling this done is valgrind-mpi/armel.
> 
All gone finally.

Cheers,
Julien

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