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Bug#770867: marked as done (unblock: ants/2.1.0~rc2+git3-g9103999-4)

Your message dated Sun, 30 Nov 2014 10:27:49 +0100
with message-id <20141130092749.GA18005@ugent.be>
and subject line Re: Bug#770867: unblock: ants/2.1.0~rc2+git3-g9103999-4
has caused the Debian Bug report #770867,
regarding unblock: ants/2.1.0~rc2+git3-g9103999-4
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
770867: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=770867
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: unblock

Please unblock package ants

 these two debian revisions (-3 and -4) fixed outstanding serious issues (see
 changelog below) marking ants for the autoremoval

unblock ants/2.1.0~rc2+git3-g9103999-4

here is the debdiff:

diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/changelog ants-2.1.0~rc2+git3-g9103999/debian/changelog
--- ants-2.1.0~rc2+git3-g9103999/debian/changelog	2014-08-18 23:57:59.000000000 -0400
+++ ants-2.1.0~rc2+git3-g9103999/debian/changelog	2014-11-21 15:43:54.000000000 -0500
@@ -1,3 +1,21 @@
+ants (2.1.0~rc2+git3-g9103999-4) unstable; urgency=medium
+
+  * patches/up_lower_cc_3_test_i386_precision
+    - lower precision for the ANTS_CC_3_WARP_METRIC_0 test to mitigate
+      FTBFS on i386 (Closes: #768645)
+
+ -- Yaroslav Halchenko <debian@onerussian.com>  Fri, 21 Nov 2014 15:35:44 -0500
+
+ants (2.1.0~rc2+git3-g9103999-3) unstable; urgency=medium
+
+  * Added Conflicts for gpe-conf also providing bl.1.gz manpage
+    (gpe-conf is for embedded systems, so unlikely to be co-installed with
+    ants in production) (Closes: #768222)
+  * patches/up_Rscript
+    - prepend Rscript call with /usr/bin/env
+
+ -- Yaroslav Halchenko <debian@onerussian.com>  Wed, 05 Nov 2014 21:27:30 -0500
+
 ants (2.1.0~rc2+git3-g9103999-2) unstable; urgency=medium
 
   * Robustify bogomips comparison, fix tests execution
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/control ants-2.1.0~rc2+git3-g9103999/debian/control
--- ants-2.1.0~rc2+git3-g9103999/debian/control	2014-08-18 23:57:59.000000000 -0400
+++ ants-2.1.0~rc2+git3-g9103999/debian/control	2014-11-21 15:43:54.000000000 -0500
@@ -24,6 +24,7 @@
 Package: ants
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
+Conflicts: gpe-conf
 Recommends: environment-modules
 Suggests: fsl, gridengine-client, r-base-core
 Description: advanced normalization tools for brain and image analysis
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/patches/deb_local-data.patch ants-2.1.0~rc2+git3-g9103999/debian/patches/deb_local-data.patch
--- ants-2.1.0~rc2+git3-g9103999/debian/patches/deb_local-data.patch	2014-08-18 23:57:59.000000000 -0400
+++ ants-2.1.0~rc2+git3-g9103999/debian/patches/deb_local-data.patch	2014-11-21 15:43:54.000000000 -0500
@@ -5,8 +5,8 @@
 Forwarded: no
 Last-Update: 2014-08-11
 
---- ants-2.0.0.orig/CMake/ANTSExternalData.cmake
-+++ ants-2.0.0/CMake/ANTSExternalData.cmake
+--- a/CMake/ANTSExternalData.cmake
++++ b/CMake/ANTSExternalData.cmake
 @@ -31,14 +31,7 @@ file:///var/bigharddrive/%(algo)/%(hash)
  mark_as_advanced(ExternalData_URL_TEMPLATES)
  list(APPEND ExternalData_URL_TEMPLATES
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/patches/series ants-2.1.0~rc2+git3-g9103999/debian/patches/series
--- ants-2.1.0~rc2+git3-g9103999/debian/patches/series	2014-08-18 23:57:59.000000000 -0400
+++ ants-2.1.0~rc2+git3-g9103999/debian/patches/series	2014-11-21 15:43:54.000000000 -0500
@@ -1 +1,3 @@
+up_lower_cc_3_test_i386_precision
+up_Rscript
 deb_local-data.patch
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/patches/up_lower_cc_3_test_i386_precision ants-2.1.0~rc2+git3-g9103999/debian/patches/up_lower_cc_3_test_i386_precision
--- ants-2.1.0~rc2+git3-g9103999/debian/patches/up_lower_cc_3_test_i386_precision	1969-12-31 19:00:00.000000000 -0500
+++ ants-2.1.0~rc2+git3-g9103999/debian/patches/up_lower_cc_3_test_i386_precision	2014-11-21 15:43:54.000000000 -0500
@@ -0,0 +1,11 @@
+--- a/Examples/TestSuite/ANTS_CC_3_test.cmake
++++ b/Examples/TestSuite/ANTS_CC_3_test.cmake
+@@ -23,7 +23,7 @@ set_property(TEST ${THIS_TEST_NAME}_JPG
+ add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_0 COMMAND $<TARGET_FILE:MeasureImageSimilarity> 2 0
+  ${R16_IMAGE} ${WARP_IMAGE}
+  ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
+- 14.3283 0.05)
++ 14.3283 0.1)
+ set_property(TEST ${THIS_TEST_NAME}_WARP_METRIC_0 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)
+ 
+ add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_1 COMMAND $<TARGET_FILE:MeasureImageSimilarity> 2 1
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/patches/up_Rscript ants-2.1.0~rc2+git3-g9103999/debian/patches/up_Rscript
--- ants-2.1.0~rc2+git3-g9103999/debian/patches/up_Rscript	1969-12-31 19:00:00.000000000 -0500
+++ ants-2.1.0~rc2+git3-g9103999/debian/patches/up_Rscript	2014-11-21 15:43:54.000000000 -0500
@@ -0,0 +1,8 @@
+--- a/Scripts/cbf_pasl_robust_batch.R
++++ b/Scripts/cbf_pasl_robust_batch.R
+@@ -1,4 +1,4 @@
+-#!Rscript --vanilla --slave
++#!/usr/bin/env Rscript
+ 
+ library( "ANTsR" )
+ library("extremevalues" )

-- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 3.17-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

--- End Message ---
--- Begin Message --- 
Hi,

On Mon, Nov 24, 2014 at 02:52:21PM -0500, Yaroslav Halchenko wrote:
> Please unblock package ants

> unblock ants/2.1.0~rc2+git3-g9103999-4

It was unblocked by Adam, and migrated to jessie.

Cheers,

Ivo

--- End Message ---
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