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Bug#596733: marked as done (unblock: ncbi-tools6/6.1.20090809-2)

Your message dated Thu, 14 Oct 2010 23:15:58 +0200
with message-id <4CB7730E.5080805@dogguy.org>
and subject line Re: Bug#596733: unblock: ncbi-tools6/6.1.20090809-2
has caused the Debian Bug report #596733,
regarding unblock: ncbi-tools6/6.1.20090809-2
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
596733: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=596733
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: unblock

Greetings!

ncbi-tools6 recently had its first upstream release in a year, issued
a few days before your latest announcement.  (As the version number
indicates, the sources themselves are somewhat older; however, the
public release thereof didn't occur until August 27.)  Here's the
changelog block:

ncbi-tools6 (6.1.20100808-1) experimental; urgency=low

  * New upstream release; the upgrade to BLAST 2.2.24 (from 2.2.21) should
    address a formatdb regression.  (LP: #586219.)
  * Uploading to experimental because squeeze is frozen.
  * debian/rules
    - Clean up compilation settings; in particular, use dpkg-buildflags rather
      than relying on dpkg-buildpackage to have set CFLAGS appropriately.
    - (clean): restore expected empty directories if necessary,
      for compatibility with VCSes (notably git) that don't track them.
    - (install-indep-stamp): adapt to new ncbilogo.ico contents.
    - (VIB): add asndisc, as upstream takes care to publish binaries thereof.
  * debian/ncbi-tools6.install: likewise add asndisc.
  * (debian/).gitignore: Ignore content generated during build.
  * debian/lib{ncbi6,vibrant6a}.symbols: update for latest release.
  * make/makenet.unx: don't link asndisc against extraneous libraries.
  * doc/man/*.1: update for latest release.
  * doc/man/asndisc.1: throw together a man page for asndisc.
  * doc/man/cleanasn.1: fix SEE ALSO formatting.
  * debian/control:
    - bump dpkg-dev build-dep to >= 1.15.7 for dpkg-buildflags.
    - Standards-Version: 3.9.1 (already compliant).
    - note switch to git-mediated Debian-Med team maintenance.

 -- Aaron M. Ucko <ucko@debian.org>  Fri, 03 Sep 2010 17:43:17 -0400

In particular, please note that this upload fixes a nasty regression
reported in Launchpad:

https://bugs.launchpad.net/ubuntu/+source/ncbi-tools6/+bug/586219

There's no corresponding Debian bug report at present, but I can
formally issue one if you'd like. ;-)

At any rate, I uploaded my packages of the new release to experimental
out of respect for the freeze, but would greatly appreciate it if you
could please authorize a reupload to unstable with the intent of
making it into squeeze.  I concede that the diff

http://git.debian.org/?p=debian-med/ncbi-tools6.git;a=commitdiff;hp=3a98718;h=c4b77b0

is on the large side; however, the impact on reverse dependencies
should be negligible, as most of the changed interfaces are only used
internally.  (Also, leaving out changes to spacing and fully generated
files helps a fair bit; the result is still larger than I care to
attach :-/, but I've posted a copy at

http://people.debian.org/~ucko/ncbi-tools6_6.1.20100808-1.full-diff

that you're welcome to review as you see fit.)

Per reportbug, I'm including the relevant unblock directive for your
convenience:

unblock ncbi-tools6/6.1.20100808-2

Thanks in advance for considering this request; please let me know if
you have any questions or concerns.

--- End Message ---
--- Begin Message --- 
On 10/14/2010 11:01 PM, Aaron M. Ucko wrote:
> Mehdi Dogguy <mehdi@dogguy.org> writes:
> 
>> The packaging changes look ok (I'll re-review them once they hit the
>> archive).
> 
> Thanks!  I uploaded them last night, with the following changelog entry:
> 
> ncbi-tools6 (6.1.20090809-2) unstable; urgency=low
> 

Unblocked.

Regards,

-- 
Mehdi Dogguy مهدي الدڤي
http://dogguy.org/

--- End Message ---
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