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Bug#603530: marked as done (RM: bwa/0.5.8a-1)



Your message dated Fri, 19 Nov 2010 01:00:59 +0100
with message-id <20101119000059.GS5063@radis.liafa.jussieu.fr>
and subject line Re: Please unblock bwa/0.5.8c-1
has caused the Debian Bug report #603530,
regarding RM: bwa/0.5.8a-1
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
603530: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=603530
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: rm

Dear release team,

bwa in Testing can product incorrect results (#601568). Since bwa has not been
in a stable release before, and since we are in deep freeze, I think that the
best solution is to remove it.

In case you wonder why I have not raised it earlier, I indeed added
debian-release@lists.debian.org as X-Debbugs-Cc when reporting (through
reportbug), but for an unknown reason, the message was never delivered.

Have a nice day,

-- Charles Plessy, Debian Med team, Tsurumi, Kanagawa, Japan

-- System Information:
Debian Release: squeeze/sid
  APT prefers testing
  APT policy: (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.32-5-amd64 (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash



--- End Message ---
--- Begin Message ---
On Mon, Nov 15, 2010 at 10:03:21 +0100, Andreas Tille wrote:

> Hi,
> 
> bug #601568 (Bug in scoring matrix incurs errors in indel calling.) in
> bwa/0.5.8a-1 is serios according to upstream and fixed in bwa/0.5.8c-1
> which is just in unstable.  The package itself is of some importance for
> the Debian Med team because it concerns new generation sequencing a
> quite chalanging field in genetic research.  It would be great if you
> could unblock bwa/0.5.8c-1 to have the fixed version in Squeeze.
> 
Done.

Cheers,
Julien

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