Thanks. Just done that. Hopefully it’ll work this time.
Hao
From:
"Shepherd, Lori" <Lori.Shepherd@RoswellPark.org>
Date: Wednesday, January 10, 2024 at 8:30 PM
To: "Wu, Hao" <hao.wu@emory.edu>, Andreas Tille <andreas@an3as.eu>, Harry Feng <hxf155@case.edu>
Cc: "1058613@bugs.debian.org" <1058613@bugs.debian.org>, Debian R <debian-r@lists.debian.org>, Bioconductor Package Maintainer <maintainer@bioconductor.org>
Subject: Re: [External] Re: Source archive of DSS missing
1.
You need a valid version bump for it to propagate on Bioconductor systems. so it devel you would need to push a bump to 1.51.1
2.
There are always two active branches in Bioconductor. devel and the current release found currently on branch RELEASE_3_18. You would have to push to
RELEASE_3_18 branch in order fo the change to be active in release. (with a valid version bump of 1.50.1)
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Wu, Hao <hao.wu@emory.edu>
Sent: Tuesday, January 9, 2024 5:29 PM
To: Kern, Lori <Lori.Shepherd@RoswellPark.org>; Andreas Tille <andreas@an3as.eu>; Hao Feng <hxf155@case.edu>
Cc: 1058613@bugs.debian.org <1058613@bugs.debian.org>; Debian R <debian-r@lists.debian.org>; Bioconductor Package Maintainer <maintainer@bioconductor.org>
Subject: Re: [External] Re: Source archive of DSS missing
I thought I have fixed this. Just checked, at least from my end I have added edgeR to suggests, and have pushed the change. What else can I do?
@Lori, if the change is not there, could you please help me to make this change? DSS is pretty widely used and I certainly don’t want it to be deprecated.
Thank you so much.
Regards,
Hao
From:
"Shepherd, Lori" <Lori.Shepherd@RoswellPark.org>
Date: Tuesday, January 9, 2024 at 11:51 PM
To: Andreas Tille <andreas@an3as.eu>, "Wu, Hao" <hao.wu@emory.edu>, Harry Feng <hxf155@case.edu>
Cc: "1058613@bugs.debian.org" <1058613@bugs.debian.org>, Debian R <debian-r@lists.debian.org>, Bioconductor Package Maintainer <maintainer@bioconductor.org>
Subject: [External] Re: Source archive of DSS missing
DSS is unavailable because it has yet to build this release. The DSS maintainers have been notified multiple times but have yet to fix
the package; DSS is currently at risk of deprecation if it is not fixed.
Per the build report the solution is very simple. DSS needs to add the needed dependency edgeR to the list of Suggests package in the DESCRIPTION
and push a valid version bump.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Andreas Tille <andreas@an3as.eu>
Sent: Tuesday, January 9, 2024 10:32 AM
To: Hao Wu <hao.wu@emory.edu>; Hao Feng <hxf155@case.edu>
Cc: 1058613@bugs.debian.org <1058613@bugs.debian.org>; Debian R <debian-r@lists.debian.org>; Bioconductor Package Maintainer <maintainer@bioconductor.org>
Subject: Re: Source archive of DSS missing
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