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Help requested: r-bioc-rhdf5lib patches need updating for bioc-3.19 upgrade



[whoops, forgot to include the debian-r list]

Hello teams,

I upgraded r-bioc-rhdf5lib from 1.24.2 to 1.26.0 in the "debian/experimental" branch on salsa.

https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib/-/tree/debian/experimental?ref_type=heads

However when I try to build other packages using the resulting "r-bioc-rhd5lib" binary package, I get the following build errors:

# From r-bioc-alabaster.base https://salsa.debian.org/r-pkg-team/r-bioc-alabaster.base
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o alabaster.base.so RcppExports.o check_csv.o check_list.o choose_numeric_missing_placeholder.o is_rfc3339.o load_csv.o load_list.o validate.o /usr/lib/R/site-library/Rhdf5lib/libs/libhdf5_cpp.a /usr/lib/R/site-library/Rhdf5lib/libs/libhdf5.a -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -L/usr/lib/R/lib -lR
/usr/bin/ld: cannot find /usr/lib/R/site-library/Rhdf5lib/libs/libhdf5_cpp.a: No such file or directory
/usr/bin/ld: cannot find /usr/lib/R/site-library/Rhdf5lib/libs/libhdf5.a: No such file or directory
collect2: error: ld returned 1 exit status

Can I get some help with this?

Please push any fixes directly to the "debian/experimental" branch on Salsa and let me know, thank you!

For building r-bioc-alabaster.base, feel free to use the bioc-3.19 test packages I've been making: https://people.debian.org/~crusoe/bioc/

--
Michael R. Crusoe

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