Re: MutationalPatterns fails one test when using latest version of stringr

["Roosmalen-3, M.J. van (Mark)" <M.J.vanRoosmalen-3@prinsesmaximacentrum.nl>]

Hi Andreas

Thank you of notifying. We currently working on fixing this error.

Best
Mark

On 10/01/2023, 21:06, "Andreas Tille" <andreas@an3as.eu> wrote:

    Hi,

    after uploading stringgr 1.5.0 to the Debian package pool
    MutationalPatterns fails with:

    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test-lengthen_mut_matrix.R:16'): (code run outside of `test_that()`) ──
    <vctrs_error_incompatible_size/vctrs_error_incompatible/vctrs_error/rlang_error/error/condition>
    Error in `stringr::str_c(rownames(mut_matrix), "_", types_rownames)`: Can't recycle `..1` (size 96) to match `..3` (size 384).
    Backtrace:
         ▆
      1. ├─MutationalPatterns::lengthen_mut_matrix(input) at test-lengthen_mut_matrix.R:16:0
      2. │ ├─... %>% do.call(cbind, .)
      3. │ └─purrr::map(mut_mat_l, .lengthen_mut_matrix_single_sample)
      4. │   └─MutationalPatterns (local) .f(.x[[i]], ...)
      5. │     └─stringr::str_c(rownames(mut_matrix), "_", types_rownames)
      6. │       └─vctrs::vec_size_common(!!!dots)
      7. ├─base::do.call(cbind, .)
      8. └─vctrs::stop_incompatible_size(...)
      9.   └─vctrs:::stop_incompatible(...)
     10.     └─vctrs:::stop_vctrs(...)
     11.       └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))

    [ FAIL 1 | WARN 1 | SKIP 0 | PASS 299 ]

    You can find a test build log here:

       https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-mutationalpatterns/30185040/log.gz

    Kind regards
       Andreas.

    -- 
    http://fam-tille.de