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Bug#1020049: marked as done (r-cran-hdf5r: FTBFS: datatype_export.c:1903:19: error: storage size of ‘myenum’ isn’t known)

Your message dated Fri, 23 Sep 2022 13:28:28 +0000
with message-id <E1obijE-00HPTz-SE@fasolo.debian.org>
and subject line Bug#1020049: fixed in r-cran-hdf5r 1.3.6+dfsg-1
has caused the Debian Bug report #1020049,
regarding r-cran-hdf5r: FTBFS: datatype_export.c:1903:19: error: storage size of ‘myenum’ isn’t known
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
1020049: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1020049
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Source: r-cran-hdf5r
Version: 1.3.5+dfsg-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas@debian.org
Usertags: ftbfs-20220917 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial    -D__USE_MINGW_ANSI_STDIO   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J8F88F/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c datatype_export.c -o datatype_export.o
> datatype_export.c: In function ‘create_DT_H5R_type_t’:
> datatype_export.c:1903:19: error: storage size of ‘myenum’ isn’t known
>  1903 |   enum H5R_type_t myenum;
>       |                   ^~~~~~
> datatype_export.c:1904:41: error: invalid application of ‘sizeof’ to incomplete type ‘enum H5R_type_t’
>  1904 |   hid_t base_type = get_h5_equiv(sizeof(enum H5R_type_t), issigned(enum H5R_type_t));
>       |                                         ^~~~
> In file included from datatype_export.c:20:
> datatype_export.c:1904:73: error: conversion to incomplete type
>  1904 |   hid_t base_type = get_h5_equiv(sizeof(enum H5R_type_t), issigned(enum H5R_type_t));
>       |                                                                         ^~~~~~~~~~
> datatype_export.h:29:24: note: in definition of macro ‘issigned’
>    29 | #define issigned(t) (((t)(-1)) < 0)
>       |                        ^
> make[1]: *** [/usr/lib/R/etc/Makeconf:168: datatype_export.o] Error 1


The full build log is available from:
http://qa-logs.debian.net/2022/09/17/r-cran-hdf5r_1.3.5+dfsg-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220917;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220917&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

--- End Message ---
--- Begin Message --- 
Source: r-cran-hdf5r
Source-Version: 1.3.6+dfsg-1
Done: Nilesh Patra <nilesh@debian.org>

We believe that the bug you reported is fixed in the latest version of
r-cran-hdf5r, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1020049@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nilesh Patra <nilesh@debian.org> (supplier of updated r-cran-hdf5r package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 23 Sep 2022 18:08:35 +0530
Source: r-cran-hdf5r
Architecture: source
Version: 1.3.6+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Nilesh Patra <nilesh@debian.org>
Closes: 1020049
Changes:
 r-cran-hdf5r (1.3.6+dfsg-1) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * Team upload.
   * New upstream version
   * Standards-Version: 4.6.1 (routine-update)
   * Reorder sequence of d/control fields by cme (routine-update)
 .
   [ Nilesh Patra ]
   * debian/p/fix-hdf.patch: Do not add a enum before H5R_type_t since
     the definition has changed in new hdf5 version (Closes: #1020049)
Checksums-Sha1:
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 4b2dc6b15de1e502034efe2681771191cdd6ad82 1230976 r-cran-hdf5r_1.3.6+dfsg.orig.tar.xz
 66490a99c5a5c7e5743bcd215a4680864e38ecd1 4880 r-cran-hdf5r_1.3.6+dfsg-1.debian.tar.xz
 74e400579046d4e7bcaca4e8c5ae8ad27f60f8f3 11265 r-cran-hdf5r_1.3.6+dfsg-1_amd64.buildinfo
Checksums-Sha256:
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 83e595bfd53714e9495bf1f9f3b86802ef476cb95e5ac6ebc670e469a1edf3d4 4880 r-cran-hdf5r_1.3.6+dfsg-1.debian.tar.xz
 304ec8a8a6b193eb4c76e01879b3107402e9932eea8f829e3d8cf507c87490e0 11265 r-cran-hdf5r_1.3.6+dfsg-1_amd64.buildinfo
Files:
 a08c30f05f9d797bd89646a7e18917d2 2158 gnu-r optional r-cran-hdf5r_1.3.6+dfsg-1.dsc
 6c800e5b187584e65351d16ba69bfe5d 1230976 gnu-r optional r-cran-hdf5r_1.3.6+dfsg.orig.tar.xz
 50ad5c242e899d6ec864cff25edce61e 4880 gnu-r optional r-cran-hdf5r_1.3.6+dfsg-1.debian.tar.xz
 19b2cc7d451de3c1bd73d37ea086ff89 11265 gnu-r optional r-cran-hdf5r_1.3.6+dfsg-1_amd64.buildinfo

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