Re: Bug#991919: transition: r-api-bioc-3.13
Hi Nilesh,
On Sat, Sep 11, 2021 at 11:24:44PM +0530, Nilesh Patra wrote:
>
> I did few uploads to get the transition moving forward. Current blocker is
> for r-bioc-biocsingular which needs r-bioc-scaledmatrix and the latter is still in NEW.
> For scaledmatrix, I've asked already on the #-ftp IRC as well, hopefully it gets proc soon.
>
> This is blocking a few packages, but I'm in the process of uploading the rest which are not directly uploaded.
> Will upload a few packages tomorrow as well.
Before going offline again I quickly uploaded r-bioc-biocsingular
so this can keep on moving now.
> > There is one thing I would love to be solved soon: I just cheated
> > with the test suite of biomformat in this patch:
> >
> > https://salsa.debian.org/r-pkg-team/r-bioc-biomformat/-/blob/master/debian/patches/fixme_disable_test_for_the_moment.patch
>
> Looking at the error, and also at the calls for those, they are called with `suppressWarnings(read_biom(min_sparse_hdf5))`
> So probably the file was not good already, since it explicitly tries to suppress warnings.
> _*Maybe*_ in this release, there were a few changes that rendered the file unusable to for analysis.
> To me, it does not appear high priority.
I would love to see that settled anyway since it looks suspicious to me.
> > I would love if somebody could find a fix - may be by discussing
> > with upstream.
>
> No time, sorry :)
It would be really cool if someone could take this task.
Kind regards
Andreas.
--
http://fam-tille.de
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