Help needed for r-bioc-rhdf5 in BioConductor transition

[Andreas Tille <andreas@an3as.eu>]

Hi,

when trying to build r-bioc-rhdf5 in Git I get

...
installing to /build/r-bioc-rhdf5-2.36.0+dfsg/debian/r-bioc-rhdf5/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5-2.36.0+dfsg/00new/rhdf5/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'rhdf5' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/build/r-bioc-rhdf5-2.36.0+dfsg/debian/r-bioc-rhdf5/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5-2.36.0+dfsg/00new/rhdf5/libs/rhdf5.so':
  /build/r-bioc-rhdf5-2.36.0+dfsg/debian/r-bioc-rhdf5/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5-2.36.0+dfsg/00new/rhdf5/libs/rhdf5.so: undefined symbol: H5Scombine_select
Error: loading failed
Execution halted
ERROR: loading failed
* removing '/build/r-bioc-rhdf5-2.36.0+dfsg/debian/r-bioc-rhdf5/usr/lib/R/site-library/rhdf5'
dh_auto_install: error: R CMD INSTALL -l /build/r-bioc-rhdf5-2.36.0\+dfsg/debian/r-bioc-rhdf5/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 05 Sep 2021 14:15:43 +0200'" returned exit code 1
make[1]: *** [debian/rules:10: override_dh_auto_install] Error 25


Any help is welcome

       Andreas.


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