Re: [RFH] Dropletutils: last package blocking bioconductor
Hi Nilesh,
On Tue, Sep 28, 2021 at 12:28:01AM +0530, Nilesh Patra wrote:
> As can be seen in r-bioc-biocgenerics excuses, dropletutils is the last package blocking it.
>
> The latest upload (in unstable) fails with:
>
> ════════════════════════════════════════════════════════════════ ── Error (test-read10x.R:129:5): read10xCounts works correctly for HDF5 counts, version < 3 ── Error: BiocParallel errors element index: 1 first error: Error in h5checktype(). Argument not of class H5IdComponent. Backtrace: █ 1. └─DropletUtils::read10xCounts(tmph5) test-read10x.R:129:4 2. ├─BiocParallel::bplapply(...) 3. └─BiocParallel::bplapply(...) ── Error (test-read10x.R:155:5): read10xCounts works correctly for HDF5 counts, version >= 3 ── Error: BiocParallel errors element index: 1 first error: Error in h5checktype(). Argument not of class H5IdComponent. Backtrace: █ 1. └─DropletUtils::read10xCounts(tmph5) test-read10x.R:155:4 2. ├─BiocParallel::bplapply(...) 3. └─BiocParallel::bplapply(...) [ FAIL 2 | WARN 4 | SKIP 0 | PASS 970 ]
>
>
> And I'm not sure what the problem is. Maybe it's not compatible with latest rhdf5lib?
I neither have any idea - but if its the last blocker excluding
the two tests that are failing.
> Any hints/leads are really appreciated
+1 anyway
Kind regards
Andreas.
--
http://fam-tille.de
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