Re: RFS r-cran-bios2cor
Hi Shayan,
On Sun, Oct 25, 2020 at 01:29:24PM +0000, Shayan Doust wrote:
> Hello,
>
> I have packaged [r-cran-bios2cor] and I believe it is close for a sponsored
> upload. However, some lintian warnings exist:
>
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/msa/human_gpcr.fa
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/msa/human_gpcr.msf
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/msa/toy2_align.fa
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/msa/toy_align.msf
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/msa/toy_helices.txt
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/rotamer/dynameomics_rotamers.csv
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/rotamer/tiny_toy_coordinates.pdb
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/rotamer/tiny_toy_dynamics.dcd
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/rotamer/toy_coordinates.pdb
> W: r-cran-bios2cor: executable-not-elf-or-script
> usr/lib/R/site-library/Bios2cor/rotamer/toy_dynamics.dcd
>
> I have never really experienced the appropriate placements of various data
> files, so would it be sensible to simply lintian override these or is there an
> appropriate placement for these files.
Its not unusual that upstream set executable flag to files that are not
really executables. This is catched by lintian and you can fix it in
dh_fixperms. Just checkout my according commit.
I've uploaded the package to new.
Thanks for your work on this
Andreas.
> [r-cran-bios2cor]: https://salsa.debian.org/r-pkg-team/r-cran-bios2cor/
pub RSA 4096/19D02395 2019-09-04 Shayan Doust (Personal EMAIL) <hello@shayandoust.me>
> sub RSA 4096/00484410 2020-06-26
>
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