Rhdf5 issue
Hi,
I'd like to package r-other-wasabi[1] for the Debian Med team. It
depends r-bioc-rhdf5[2] which in turn depends r-bioc-rhdf5lib[3]
which I just uploaded to new after linking against libhdf5. However,
I have the impression that I did something wrong since there is an
issue with r-bioc-rhdf5 which boils down to some code in
src/Makevars
which throws an error:
$ echo 'Rhdf5lib::pkgconfig("PKG_CXX_LIBS")'| R --vanilla --slave
Error in system.file("lib", package = "Rhdf5lib", mustWork = TRUE) :
no file found
Calls: <Anonymous> -> Sys.getenv -> system.file
Execution halted
While there is certainly the option to specify PKG_LIBS manually
to successfully build r-bioc-rhdf5 I'd prefer to get things right.
Any idea what needs to be fixed in r-bioc-rhdf5lib.
Kind regards
Andreas.
[1] https://salsa.debian.org/r-pkg-team/r-other-wasabi
[2] https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5
[3] https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib
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