Re: Improve autodep8 for R packages
Hi Dirk,
On Tue, Mar 13, 2018 at 03:49:09PM -0500, Dirk Eddelbuettel wrote:
>
> I looked into this once, and unless I mistaken then
>
> -- packages using (CRAN package) testthat do NOT allow running tests once
> the R package is installed (as they store tests in tests/ which does not
> migrate)
>
> -- packages using (CRAN package) RUnit do (as they store tests in
> inst/tests or inst/unitTests and everything below inst/ goes into the
> installed package
>
> where when I say 'installed' I refer to R CMD INSTALL ... which is of course
> also part of how we build the .dep.
Without having checked a very simple workaround comes to my mind. We could
install the tests to /var/lib/R/<package>/tests and symlink from /usr/...
to this location. Thus the directory structure in /usr/... looks the same
but we could write to /var/lib/...
> Autotests would be cool. AFAIK the R community does not (yet) support is
> consistently enough. Can you point to a r-cran-* package leaning on
> r-cran-testthat that does? I may have started my analysis with random /bad/
> spot checks after all...
See at the end of this mail the output of
grep r-cran-testthat r-*/debian/tests/control | sed 's#/.*##' | sort | uniq
on my local clones. In (probably) all cases where I've written the
tests the trick was to keep a copy of the tests dir in
/usr/share/doc/PACKAGE and use a wrapper script (also there) that is
copying the tests to a temporary dir.
> (There is certainly no use pattern in R land for testing once installed.
> Testing while writing / submitting package is common but needs source.)
In autopkgtests per definition the source is available.
Kind regards
Andreas.
r-bioc-annotationfilter
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--
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