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Bug#924402: marked as done (spyder3 Segmentation fault just after console comes up)



Your message dated Fri, 22 Mar 2019 17:49:48 +0000
with message-id <E1h7OIe-000Czv-Ry@fasolo.debian.org>
and subject line Bug#924402: fixed in qtwebkit-opensource-src 5.212.0~alpha2-21
has caused the Debian Bug report #924402,
regarding spyder3 Segmentation fault just after console comes up
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
924402: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=924402
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---

Package: spyder3
Version: 3.3.3+dfsg1-1
Severity: important

Dear Maintainer,

=======================================================================================================

After upgrade of spyder 3 to latest version in testing (3.3.3+dfsg1-1), spyder3 brings up console and
a few seconds later fails with a segmentation fault. This happens consistently every single time it is run.

Here is the output:
    => spyder3
    libpng warning: iCCP: known incorrect sRGB profile
    libpng warning: iCCP: known incorrect sRGB profile
    Segmentation fault

Here are the last few lines of strace before the crash:
   
   stat64("/usr/lib/i386-linux-gnu/gstreamer-1.0/libgstdecklink.so", {st_mode=S_IFREG|0644, st_size=141740, ...}) = 0
   stat64("/usr/lib/i386-linux-gnu/gstreamer-1.0/libgstfbdevsink.so", {st_mode=S_IFREG|0644, st_size=13924, ...}) = 0
   stat64("/usr/lib/i386-linux-gnu/gstreamer-1.0/libgstfluidsynthmidi.so", {st_mode=S_IFREG|0644, st_size=30532, ...}) = 0
   stat64("/usr/lib/i386-linux-gnu/gstreamer-1.0/libgstbz2.so", {st_mode=S_IFREG|0644, st_size=26468, ...}) = 0
   getdents64(43, /* 0 entries */, 32768)  = 0
   close(43)                               = 0
   futex(0xa8eb2a08, FUTEX_WAKE_PRIVATE, 2147483647) = 0
   futex(0xa8eb2a08, FUTEX_WAKE_PRIVATE, 2147483647) = 0
   futex(0xa8eb2a08, FUTEX_WAKE_PRIVATE, 2147483647) = 0
   mprotect(0x9a4a0000, 4096, PROT_READ|PROT_WRITE|PROT_EXEC) = 0
   madvise(0x9a4a0000, 4096, MADV_WILLNEED) = 0
   madvise(0x99fe3000, 12288, MADV_NORMAL) = 0
   mprotect(0x9a49e000, 4096, PROT_READ|PROT_WRITE|PROT_EXEC) = 0
   madvise(0x9a49e000, 4096, MADV_WILLNEED) = 0
   madvise(0xa0d72000, 4096, MADV_NORMAL)  = 0
   madvise(0x99fe0000, 12288, MADV_NORMAL) = 0
   madvise(0xa0d71000, 4096, MADV_NORMAL)  = 0
   madvise(0xa0d70000, 4096, MADV_NORMAL)  = 0
   madvise(0xa0d6f000, 4096, MADV_NORMAL)  = 0
   madvise(0x99bb0000, 16384, MADV_NORMAL) = 0
   madvise(0x993ec000, 8192, MADV_NORMAL)  = 0
   madvise(0x99bac000, 16384, MADV_NORMAL) = 0
   madvise(0xa0d6e000, 4096, MADV_NORMAL)  = 0
   madvise(0x99ba8000, 16384, MADV_NORMAL) = 0
   madvise(0xa0d6d000, 4096, MADV_NORMAL)  = 0
   madvise(0xa0d6c000, 4096, MADV_NORMAL)  = 0
   madvise(0xa0d6b000, 4096, MADV_NORMAL)  = 0
   madvise(0xa0d6a000, 4096, MADV_NORMAL)  = 0
   madvise(0xa0d69000, 4096, MADV_NORMAL)  = 0
   madvise(0x997e8000, 32768, MADV_NORMAL) = 0
   mprotect(0x9a49f000, 4096, PROT_READ|PROT_WRITE|PROT_EXEC) = 0
   madvise(0x9a49f000, 4096, MADV_WILLNEED) = 0
   madvise(0xa0d68000, 4096, MADV_NORMAL)  = 0
   madvise(0xa0d67000, 4096, MADV_NORMAL)  = 0
   --- SIGSEGV {si_signo=SIGSEGV, si_code=SEGV_MAPERR, si_addr=0x1c} ---
   +++ killed by SIGSEGV +++
   Segmentation fault
    

This situation has started happening with the previous version of spyder3, which before worked fine,
so may be related to a change in X (eg making Xorg suid) which affected spyder3 in a way that did not
for any other programs.

Note that spyder (version 3.3.3+dfsg1-1) works fine in the same environment, even when using python3
as the interpreter. This is the current work-around for this problem with spyder3.

=======================================================================================================


-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: i386 (i686)

Kernel: Linux 4.17.0-3-686-pae (SMP w/6 CPU cores)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set to C), LANGUAGE=en_US.UTF-8 (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set to C)
Shell: /bin/sh linked to /bin/dash
Init: sysvinit (via /sbin/init)

Versions of packages spyder3 depends on:
ii  python3-spyder  3.3.3+dfsg1-1
ii  python3.7       3.7.2-1

spyder3 recommends no packages.

spyder3 suggests no packages.

Versions of packages python3-spyder depends on:
ii  libjs-jquery            3.2.1-1
ii  libjs-mathjax           2.7.4+dfsg-1
ii  pylint3                 2.2.2-1
ii  python3                 3.7.2-1
ii  python3-chardet         3.0.4-1
ii  python3-cloudpickle     0.8.0-1
ii  python3-jedi            0.13.2-1
ii  python3-keyring         17.1.1-1
ii  python3-nbconvert       5.4-2
ii  python3-numpydoc        0.7.0-1
ii  python3-pickleshare     0.7.5-1
ii  python3-psutil          5.5.1-1
ii  python3-pycodestyle     2.4.0-2
ii  python3-pyflakes        2.0.0-1
ii  python3-pygments        2.3.1+dfsg-1
ii  python3-qtawesome       0.4.4+ds1-1
ii  python3-qtconsole       4.3.1-1
ii  python3-qtpy            1.3.1-1
ii  python3-rope            0.10.5-3
ii  python3-sphinx          1.8.4-1
ii  python3-spyder-kernels  1.0.1+really0.2.4-1
ii  python3-zmq             17.1.2-1
ii  spyder-common           3.3.3+dfsg1-1

Versions of packages python3-spyder suggests:
ii  cython3             0.29.2-2
ii  python3-matplotlib  3.0.2-2
ii  python3-numpy       1:1.16.1-1
ii  python3-pandas      0.23.3-1
ii  python3-pil         5.4.1-1
ii  python3-scipy       1.1.0-2
ii  python3-sympy       1.3-1

Versions of packages python3-pyqt5 depends on:
ii  libc6                             2.28-2
ii  libgcc1                           1:8.3.0-2
ii  libpython3.7                      3.7.2-1
ii  libqt5core5a [qtbase-abi-5-11-3]  5.11.3+dfsg-2
ii  libqt5dbus5                       5.11.3+dfsg-2
ii  libqt5designer5                   5.11.3-2
ii  libqt5gui5                        5.11.3+dfsg-2
ii  libqt5help5                       5.11.3-2
ii  libqt5network5                    5.11.3+dfsg-2
ii  libqt5printsupport5               5.11.3+dfsg-2
ii  libqt5test5                       5.11.3+dfsg-2
ii  libqt5widgets5                    5.11.3+dfsg-2
ii  libqt5xml5                        5.11.3+dfsg-2
ii  libstdc++6                        8.3.0-2
ii  python3                           3.7.2-1
ii  python3-sip [sip-py3api-12.5]     4.19.14+dfsg-1

Versions of packages python3-pyqt5 suggests:
pn  python3-pyqt5-dbg  <none>

-- no debconf information


--- End Message ---
--- Begin Message ---
Source: qtwebkit-opensource-src
Source-Version: 5.212.0~alpha2-21

We believe that the bug you reported is fixed in the latest version of
qtwebkit-opensource-src, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 924402@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Dmitry Shachnev <mitya57@debian.org> (supplier of updated qtwebkit-opensource-src package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 22 Mar 2019 11:42:38 +0300
Source: qtwebkit-opensource-src
Architecture: source
Version: 5.212.0~alpha2-21
Distribution: unstable
Urgency: medium
Maintainer: Debian Qt/KDE Maintainers <debian-qt-kde@lists.debian.org>
Changed-By: Dmitry Shachnev <mitya57@debian.org>
Closes: 909366 924402
Changes:
 qtwebkit-opensource-src (5.212.0~alpha2-21) unstable; urgency=medium
 .
   * Add fastcall attribute to JSImageConstructor::construct method.
     This fixes crash on i386 (closes: #909366, #924402). Thanks Bernhard
     Übelacker for the patch!
   * Remove -fpermissive from build flags. It was wrong and not needed
     with the applied patch.
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 eb4a6f4c517cb5b3bf7a78cb762a61a1b700bcf1 68792 qtwebkit-opensource-src_5.212.0~alpha2-21.debian.tar.xz
 163263b28181c91ed1050fe6955ef76684424910 15217 qtwebkit-opensource-src_5.212.0~alpha2-21_source.buildinfo
Checksums-Sha256:
 5d7d72debd191cec311b8a0cf83cc6b9f0147728103813e6423b6f131b55dcb9 3256 qtwebkit-opensource-src_5.212.0~alpha2-21.dsc
 15963e7f8966fb2ff258ee7373a086040a69a53e480e775bda4efac6789e70ce 68792 qtwebkit-opensource-src_5.212.0~alpha2-21.debian.tar.xz
 2a7dbd5cb0395cf3e0a88e2c65465efa36a351e672451da4c883889c6af62ac1 15217 qtwebkit-opensource-src_5.212.0~alpha2-21_source.buildinfo
Files:
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 2d0c40bff65830712e507994cc628c5e 68792 libs optional qtwebkit-opensource-src_5.212.0~alpha2-21.debian.tar.xz
 5fe301353b56f284f3e59067bfdd0bd8 15217 libs optional qtwebkit-opensource-src_5.212.0~alpha2-21_source.buildinfo

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--- End Message ---

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