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Bug#718369: marked as done (soprano: FTBFS with with clucene 2.x: undefined symbol lucene::util::atomic_threads::atomic_decrement)

Your message dated Tue, 06 Aug 2013 15:08:12 +0000
with message-id <E1V6irs-0004kl-G6@franck.debian.org>
and subject line Bug#718369: fixed in soprano 2.9.2+dfsg.1-4
has caused the Debian Bug report #718369,
regarding soprano: FTBFS with with clucene 2.x: undefined symbol lucene::util::atomic_threads::atomic_decrement
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
718369: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=718369
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: soprano
Version: 2.9.2+dfsg.1-1
Severity: serious
Tags: patch

Hi,

soprano fails to build with the recently updated clucene 2.x:

[...]
/usr/bin/c++  -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2  -Wnon-virtual-dtor -Wno-long-long -ansi -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-check-new -fno-common -fvisibility=hidden -fvisibility-inlines-hidden -fexceptions -fvisibility=default -fno-visibility-inlines-hidden  -Wl,-z,relro -Wl,--as-needed -Wl,--no-undefined -shared -Wl,-soname,libsopranoindex.so.1 -o libsopranoindex.so.1.1.0 CMakeFiles/sopranoindex.dir/cluceneindex.cpp.o CMakeFiles/sopranoindex.dir/clucenedocumentwrapper.cpp.o CMakeFiles/sopranoindex.dir/cluceneutils.cpp.o CMakeFiles/sopranoindex.dir/indexfiltermodel.cpp.o CMakeFiles/sopranoindex.dir/tstring.cpp.o CMakeFiles/sopranoindex.dir/indexqueryhit.cpp.o CMakeFiles/sopranoindex.dir/indexqueryhititeratorbackend.cpp.o CMakeFiles/sopranoindex.dir/queryhitwrapperresultiteratorbackend.cpp.o -lQtCore -lpthread ../soprano/libsoprano.so.4.3.0 -lclucene-core -lQtCore -lpthread -Wl,-rpath,/tmp/soprano-2.9.2+dfsg.1/Build/soprano: 
CMakeFiles/sopranoindex.dir/cluceneindex.cpp.o: In function `Soprano::Index::CLuceneIndex::Private::commit()':
/tmp/soprano-2.9.2+dfsg.1/Build/index/../../index/cluceneindex.cpp:248: undefined reference to `lucene::util::atomic_threads::atomic_decrement(unsigned int*)'
collect2: error: ld returned 1 exit status
make[4]: *** [index/libsopranoindex.so.1.1.0] Error 1
make[4]: Leaving directory `/tmp/soprano-2.9.2+dfsg.1/Build'
make[3]: *** [index/CMakeFiles/sopranoindex.dir/all] Error 2
make[3]: Leaving directory `/tmp/soprano-2.9.2+dfsg.1/Build'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/tmp/soprano-2.9.2+dfsg.1/Build'
dh_auto_build: make -j1 returned exit code 2
make[1]: *** [pre_build_dh_auto_build] Error 2
make[1]: Leaving directory `/tmp/soprano-2.9.2+dfsg.1'
make: *** [debian/dhmk_build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2

That symbol is in libclucene-shared:

$ objdump -T /usr/lib/x86_64-linux-gnu/libclucene-core.so | c++filt | grep lucene::util::atomic_threads::atomic_decrement
0000000000000000      DF *UND*	0000000000000000              lucene::util::atomic_threads::atomic_decrement(unsigned int*)
$ objdump -T /usr/lib/x86_64-linux-gnu/libclucene-shared.so | c++filt | grep lucene::util::atomic_threads::atomic_decrement
0000000000005f20 g    DF .text	000000000000000e  Base        lucene::util::atomic_threads::atomic_decrement(unsigned int*)

Thanks to Barry deFreese on IRC who pointed me to the upstream patch, which is
http://lists.kde.org/?l=kde-commits&m=136932825018555&w=2

Debdiff attached.

Regards,

Rene

diff -Nru soprano-2.9.2+dfsg.1/debian/changelog soprano-2.9.2+dfsg.1/debian/changelog
--- soprano-2.9.2+dfsg.1/debian/changelog	2013-05-11 13:25:56.000000000 +0000
+++ soprano-2.9.2+dfsg.1/debian/changelog	2013-07-30 20:38:25.000000000 +0000
@@ -1,3 +1,10 @@
+soprano (2.9.2+dfsg.1-2) UNRELEASED; urgency=low
+
+  * backort http://lists.kde.org/?l=kde-commits&m=136932825018555&w=2 to fix
+    build with clucene 2.x 
+
+ -- Rene Engelhard <rene@debian.org>  Tue, 30 Jul 2013 18:22:15 +0000
+
 soprano (2.9.2+dfsg.1-1) unstable; urgency=low
 
   * New upstream release.
diff -Nru soprano-2.9.2+dfsg.1/debian/patches/find-clucene-shared.diff soprano-2.9.2+dfsg.1/debian/patches/find-clucene-shared.diff
--- soprano-2.9.2+dfsg.1/debian/patches/find-clucene-shared.diff	1970-01-01 00:00:00.000000000 +0000
+++ soprano-2.9.2+dfsg.1/debian/patches/find-clucene-shared.diff	2013-07-30 20:19:49.000000000 +0000
@@ -0,0 +1,103 @@
+Description: backport http://lists.kde.org/?l=kde-commits&m=136932825018555&w=2
+Author: Rene Engelhard <rene@debian.org>
+
+---
+Origin: upstream, http://lists.kde.org/?l=kde-commits&m=136932825018555&w=2
+Forwarded: http://lists.kde.org/?l=kde-commits&m=136932825018555&w=2
+
+--- soprano-2.9.2+dfsg.1.orig/cmake/modules/FindCLucene.cmake
++++ soprano-2.9.2+dfsg.1/cmake/modules/FindCLucene.cmake
+@@ -4,7 +4,8 @@
+ #
+ # CLUCENE_INCLUDE_DIR  = where CLucene/StdHeader.h can be found
+ # CLUCENE_LIBRARY_DIR  = where CLucene/clucene-config.h can be found
+-# CLUCENE_LIBRARY      = the library to link against CLucene
++# CLUCENE_LIBRARY      = the library to link against CLucene DEPRECATED Use CLUCENE_LIBRARIES
++# CLUCENE_LIBRARIES    = the libraries to link against CLucene
+ # CLUCENE_VERSION      = The CLucene version string
+ # CLucene_FOUND        = set to 1 if clucene is found
+ #
+@@ -36,13 +37,27 @@ SET(TRIAL_INCLUDE_PATHS
+   /sw/include
+   /usr/pkg/include
+   )
++
+ FIND_LIBRARY_WITH_DEBUG(CLUCENE_LIBRARY
+   WIN32_DEBUG_POSTFIX d
+   NAMES clucene clucene-core
+   PATHS ${TRIAL_LIBRARY_PATHS})
+-IF (CLUCENE_LIBRARY)
+-  MESSAGE(STATUS "Found CLucene library: ${CLUCENE_LIBRARY}")
+-ENDIF (CLUCENE_LIBRARY)
++# On Linux, Soprano needs both clucene-core and clucene-shared
++# CLUCENE_LIBRARIES contains both entries if available
++set(CLUCENE_LIBRARIES ${CLUCENE_LIBRARY})
++
++find_library(CLUCENE_SHARED_LIBRARY
++  NAMES clucene-shared
++  HINTS ${TRIAL_LIBRARY_PATHS}
++)
++
++if(CLUCENE_SHARED_LIBRARY)
++  set(CLUCENE_LIBRARIES ${CLUCENE_LIBRARIES} ${CLUCENE_SHARED_LIBRARY})
++endif()
++
++IF(CLUCENE_LIBRARIES)
++  message(STATUS "Found CLucene: ${CLUCENE_LIBRARIES}")
++ENDIF (CLUCENE_LIBRARIES)
+ FIND_PATH(CLUCENE_INCLUDE_DIR
+   NAMES CLucene.h
+   PATHS ${TRIAL_INCLUDE_PATHS})
+@@ -77,13 +92,13 @@ IF (CLUCENE_LIBRARY_DIR)
+   ENDIF (CLMATCH)
+ ENDIF (CLUCENE_LIBRARY_DIR)
+ 
+-IF(CLUCENE_INCLUDE_DIR AND CLUCENE_LIBRARY AND CLUCENE_LIBRARY_DIR AND CLUCENE_GOOD_VERSION)
++IF(CLUCENE_INCLUDE_DIR AND CLUCENE_LIBRARIES AND CLUCENE_LIBRARY_DIR AND CLUCENE_GOOD_VERSION)
+   SET(CLucene_FOUND TRUE)
+-ENDIF(CLUCENE_INCLUDE_DIR AND CLUCENE_LIBRARY AND CLUCENE_LIBRARY_DIR AND CLUCENE_GOOD_VERSION)
++ENDIF(CLUCENE_INCLUDE_DIR AND CLUCENE_LIBRARIES AND CLUCENE_LIBRARY_DIR AND CLUCENE_GOOD_VERSION)
+ 
+ IF(CLucene_FOUND)
+   IF(NOT CLucene_FIND_QUIETLY)
+-    MESSAGE(STATUS "Found CLucene: ${CLUCENE_LIBRARY}")
++    MESSAGE(STATUS "Found CLucene: ${CLUCENE_LIBRARIES}")
+   ENDIF(NOT CLucene_FIND_QUIETLY)
+ ELSE(CLucene_FOUND)
+   IF(CLucene_FIND_REQUIRED)
+@@ -94,5 +109,7 @@ ENDIF(CLucene_FOUND)
+ MARK_AS_ADVANCED(
+   CLUCENE_INCLUDE_DIR 
+   CLUCENE_LIBRARY_DIR 
++  CLUCENE_SHARED_LIBRARY 
+   CLUCENE_LIBRARY 
++  CLUCENE_LIBRARIES 
+   )
+--- soprano-2.9.2+dfsg.1.orig/index/CMakeLists.txt
++++ soprano-2.9.2+dfsg.1/index/CMakeLists.txt
+@@ -46,7 +46,7 @@ target_link_libraries(
+   sopranoindex
+   ${QT_QTCORE_LIBRARY}
+   soprano
+-  ${CLUCENE_LIBRARY}
++  ${CLUCENE_LIBRARIES}
+ )
+ 
+ set_target_properties(
+--- soprano-2.9.2+dfsg.1.orig/test/CMakeLists.txt
++++ soprano-2.9.2+dfsg.1/test/CMakeLists.txt
+@@ -156,12 +156,12 @@ if(BUILD_CLUCENE_INDEX)
+   # TString test
+   qt4_automoc(tstringtest tstringtest.cpp)
+   add_executable(tstringtest tstringtest.cpp stringpool.cpp ../index/tstring.cpp)
+-  target_link_libraries(tstringtest ${QT_QTCORE_LIBRARY} ${QT_QTTEST_LIBRARY} ${CLUCENE_LIBRARY})
++  target_link_libraries(tstringtest ${QT_QTCORE_LIBRARY} ${QT_QTTEST_LIBRARY} ${CLUCENE_LIBRARIES})
+   add_test(tstringtest ${EXECUTABLE_OUTPUT_PATH}/tstringtest)
+ 
+   qt4_automoc(cluceneindextest cluceneindextest.cpp)
+   add_executable(cluceneindextest cluceneindextest.cpp stringpool.cpp)
+-  target_link_libraries(cluceneindextest soprano sopranoindex ${QT_QTCORE_LIBRARY} ${QT_QTTEST_LIBRARY} ${CLUCENE_LIBRARY})
++  target_link_libraries(cluceneindextest soprano sopranoindex ${QT_QTCORE_LIBRARY} ${QT_QTTEST_LIBRARY} ${CLUCENE_LIBRARIES})
+   add_test(cluceneindextest ${EXECUTABLE_OUTPUT_PATH}/cluceneindextest)
+ 
+   qt4_automoc(indexmodelmultithreadingtest indexmodelmultithreadingtest.cpp)
diff -Nru soprano-2.9.2+dfsg.1/debian/patches/series soprano-2.9.2+dfsg.1/debian/patches/series
--- soprano-2.9.2+dfsg.1/debian/patches/series	2013-05-11 13:25:56.000000000 +0000
+++ soprano-2.9.2+dfsg.1/debian/patches/series	2013-07-30 20:11:32.000000000 +0000
@@ -1 +1,2 @@
 redland_raptor2_support.h
+find-clucene-shared.diff

--- End Message ---
--- Begin Message --- 
Source: soprano
Source-Version: 2.9.2+dfsg.1-4

We believe that the bug you reported is fixed in the latest version of
soprano, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 718369@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Pino Toscano <pino@debian.org> (supplier of updated soprano package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Tue, 06 Aug 2013 16:18:51 +0200
Source: soprano
Binary: soprano-daemon libsoprano4 libsoprano-dev libsoprano-doc libsoprano-dbg
Architecture: source amd64 all
Version: 2.9.2+dfsg.1-4
Distribution: unstable
Urgency: low
Maintainer: Debian Qt/KDE Maintainers <debian-qt-kde@lists.debian.org>
Changed-By: Pino Toscano <pino@debian.org>
Description: 
 libsoprano-dbg - debugging symbols for the Soprano RDF framework
 libsoprano-dev - development files for the Soprano RDF framework
 libsoprano-doc - developer documentation for the Soprano RDF framework
 libsoprano4 - libraries for the Soprano RDF framework
 soprano-daemon - daemon for the Soprano RDF framework
Closes: 718369
Changes: 
 soprano (2.9.2+dfsg.1-4) unstable; urgency=low
 .
   * Team upload.
   * Remove last bits of multiarch, since soprano is not read for it and
     would require more work to also not break rdepends:
     - drop patch add_m-a_dirs_to_the_search_path.diff
     - remove Pre-Depends
   * Backport upstream commit 4bfdfdfdee03080ec9ca21eeb168c2ab9dbba0bb to fix
     compatibility with clucene 2.x; patch upstream_find-clucene-shared.diff.
     (Closes: #718369)
   * Update symbols file.
Checksums-Sha1: 
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Files: 
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