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Bug#615131: marked as done (libslicer3-dev and libmrml1-dev: error when trying to install together)

Your message dated Fri, 18 Mar 2011 01:04:05 +0000
with message-id <E1Q0O6n-0003au-Bo@franck.debian.org>
and subject line Bug#615131: fixed in slicer 3.6.3~svn16075-2
has caused the Debian Bug report #615131,
regarding libslicer3-dev and libmrml1-dev: error when trying to install together
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
615131: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=615131
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: libmrml1-dev,libslicer3-dev
Version: libmrml1-dev/0.1.14-9+b3
Version: libslicer3-dev/3.6.3~svn16075-1
Severity: serious
User: treinen@debian.org
Usertags: edos-file-overwrite

Date: 2011-02-25
Architecture: amd64
Distribution: sid

Hi,

automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:


WARNING: The following packages cannot be authenticated!
  gcc-4.5-base libgpg-error0 libgcrypt11 libtasn1-3 libgnutls26 libkeyutils1
  libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2 libidn11 libsasl2-2
  libldap-2.4-2 libpcre3 libxml2 mime-support python2.6-minimal libexpat1
  python2.6 python-minimal python python-support ucf openssl ca-certificates
  libfreetype6 ttf-dejavu-core fontconfig-config libfontconfig1 fontconfig
  libxau6 x11-common libice6 libsm6 libxdmcp6 libxcb1 libx11-data libx11-6
  libxt6 libaudio2 libavutil50 libdirac-encoder0 libfaad2 libgsm1 libopenjpeg2
  liborc-0.4-0 libschroedinger-1.0-0 libspeex1 libogg0 libtheora0 libva1
  libvorbis0a libvorbisenc2 libvpx0 libavcodec52 librtmp0 libavformat52
  libc-dev-bin linux-libc-dev libc6-dev libssh2-1 libcurl3 libcurl3-gnutls
  libdrm2 libexpat1-dev libfftw3-3 libgdcm2.0 libgfortran3 libxfixes3
  libxdamage1 libxext6 libxxf86vm1 libgl1-mesa-glx libgl2ps0 libglib2.0-0
  libhdf5-serial-1.8.4 libpng12-0 libjpeg62 libtiff4 libinsighttoolkit3.20
  mysql-common libmysqlclient16 libnetcdf6 libibverbs1 libnuma1 libtorque2
  libopenmpi1.3 libpq5 libqtcore4 liblcms1 libmng1 libxrender1 libqtgui4
  libswscale0 libvtk5.6 tcl8.5 libxft2 libxss1 tk8.5 tcl-vtk
  libkwwidgets1.0.1009 libmrml1c2a libmrml1-dev libpython2.6 libteem1
  python-vtk libslicer3 libslicer3-dev

Extracting templates from packages: 27%
Extracting templates from packages: 55%
Extracting templates from packages: 83%
Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package gcc-4.5-base.
(Reading database ... 8735 files and directories currently installed.)
Unpacking gcc-4.5-base (from .../gcc-4.5-base_4.5.2-4_amd64.deb) ...
Selecting previously deselected package libgpg-error0.
Unpacking libgpg-error0 (from .../libgpg-error0_1.10-0.3_amd64.deb) ...
Selecting previously deselected package libgcrypt11.
Unpacking libgcrypt11 (from .../libgcrypt11_1.4.6-5_amd64.deb) ...
Selecting previously deselected package libtasn1-3.
Unpacking libtasn1-3 (from .../libtasn1-3_2.9-2_amd64.deb) ...
Selecting previously deselected package libgnutls26.
Unpacking libgnutls26 (from .../libgnutls26_2.10.4-2_amd64.deb) ...
Selecting previously deselected package libkeyutils1.
Unpacking libkeyutils1 (from .../libkeyutils1_1.4-4_amd64.deb) ...
Selecting previously deselected package libkrb5support0.
Unpacking libkrb5support0 (from .../libkrb5support0_1.8.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package libk5crypto3.
Unpacking libk5crypto3 (from .../libk5crypto3_1.8.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package libkrb5-3.
Unpacking libkrb5-3 (from .../libkrb5-3_1.8.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package libgssapi-krb5-2.
Unpacking libgssapi-krb5-2 (from .../libgssapi-krb5-2_1.8.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package libidn11.
Unpacking libidn11 (from .../libidn11_1.18-1_amd64.deb) ...
Selecting previously deselected package libsasl2-2.
Unpacking libsasl2-2 (from .../libsasl2-2_2.1.23.dfsg1-7_amd64.deb) ...
Selecting previously deselected package libldap-2.4-2.
Unpacking libldap-2.4-2 (from .../libldap-2.4-2_2.4.23-7_amd64.deb) ...
Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_amd64.deb) ...
Selecting previously deselected package mime-support.
Unpacking mime-support (from .../mime-support_3.51-1_all.deb) ...
Selecting previously deselected package python2.6-minimal.
Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.6-8+b1_amd64.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
Selecting previously deselected package python2.6.
Unpacking python2.6 (from .../python2.6_2.6.6-8+b1_amd64.deb) ...
Selecting previously deselected package python-minimal.
Unpacking python-minimal (from .../python-minimal_2.6.6-3+squeeze5_all.deb) ...
Selecting previously deselected package python.
Unpacking python (from .../python_2.6.6-3+squeeze5_all.deb) ...
Selecting previously deselected package python-support.
Unpacking python-support (from .../python-support_1.0.11_all.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ...
Moving old data out of the way
Selecting previously deselected package openssl.
Unpacking openssl (from .../openssl_0.9.8o-5_amd64.deb) ...
Selecting previously deselected package ca-certificates.
Unpacking ca-certificates (from .../ca-certificates_20090814+nmu2_all.deb) ...
Selecting previously deselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_amd64.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.32-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.1_all.deb) ...
Selecting previously deselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.1_amd64.deb) ...
Selecting previously deselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-2.1_amd64.deb) ...
Selecting previously deselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
Selecting previously deselected package x11-common.
Unpacking x11-common (from .../x11-common_1%3a7.6+3_all.deb) ...
Selecting previously deselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
Selecting previously deselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_amd64.deb) ...
Selecting previously deselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
Selecting previously deselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-2_amd64.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.1-5_all.deb) ...
Selecting previously deselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.4.1-5_amd64.deb) ...
Selecting previously deselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.0.9-2_amd64.deb) ...
Selecting previously deselected package libaudio2.
Unpacking libaudio2 (from .../libaudio2_1.9.2-4_amd64.deb) ...
Selecting previously deselected package libavutil50.
Unpacking libavutil50 (from .../libavutil50_4%3a0.6.1-5_amd64.deb) ...
Selecting previously deselected package libdirac-encoder0.
Unpacking libdirac-encoder0 (from .../libdirac-encoder0_1.0.2-3_amd64.deb) ...
Selecting previously deselected package libfaad2.
Unpacking libfaad2 (from .../libfaad2_2.7-6_amd64.deb) ...
Selecting previously deselected package libgsm1.
Unpacking libgsm1 (from .../libgsm1_1.0.13-3_amd64.deb) ...
Selecting previously deselected package libopenjpeg2.
Unpacking libopenjpeg2 (from .../libopenjpeg2_1.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package liborc-0.4-0.
Unpacking liborc-0.4-0 (from .../liborc-0.4-0_1%3a0.4.11-2_amd64.deb) ...
Selecting previously deselected package libschroedinger-1.0-0.
Unpacking libschroedinger-1.0-0 (from .../libschroedinger-1.0-0_1.0.10-2_amd64.deb) ...
Selecting previously deselected package libspeex1.
Unpacking libspeex1 (from .../libspeex1_1.2~rc1-1_amd64.deb) ...
Selecting previously deselected package libogg0.
Unpacking libogg0 (from .../libogg0_1.2.0~dfsg-1_amd64.deb) ...
Selecting previously deselected package libtheora0.
Unpacking libtheora0 (from .../libtheora0_1.1.1+dfsg.1-3_amd64.deb) ...
Selecting previously deselected package libva1.
Unpacking libva1 (from .../libva1_1.0.8-3_amd64.deb) ...
Selecting previously deselected package libvorbis0a.
Unpacking libvorbis0a (from .../libvorbis0a_1.3.2-1_amd64.deb) ...
Selecting previously deselected package libvorbisenc2.
Unpacking libvorbisenc2 (from .../libvorbisenc2_1.3.2-1_amd64.deb) ...
Selecting previously deselected package libvpx0.
Unpacking libvpx0 (from .../libvpx0_0.9.5-2_amd64.deb) ...
Selecting previously deselected package libavcodec52.
Unpacking libavcodec52 (from .../libavcodec52_4%3a0.6.1-5_amd64.deb) ...
Selecting previously deselected package librtmp0.
Unpacking librtmp0 (from .../librtmp0_2.3-2_amd64.deb) ...
Selecting previously deselected package libavformat52.
Unpacking libavformat52 (from .../libavformat52_4%3a0.6.1-5_amd64.deb) ...
Selecting previously deselected package libc-dev-bin.
Unpacking libc-dev-bin (from .../libc-dev-bin_2.11.2-11_amd64.deb) ...
Selecting previously deselected package linux-libc-dev.
Unpacking linux-libc-dev (from .../linux-libc-dev_2.6.37-1_amd64.deb) ...
Selecting previously deselected package libc6-dev.
Unpacking libc6-dev (from .../libc6-dev_2.11.2-11_amd64.deb) ...
Selecting previously deselected package libssh2-1.
Unpacking libssh2-1 (from .../libssh2-1_1.2.6-1_amd64.deb) ...
Selecting previously deselected package libcurl3.
Unpacking libcurl3 (from .../libcurl3_7.21.3-1_amd64.deb) ...
Selecting previously deselected package libcurl3-gnutls.
Unpacking libcurl3-gnutls (from .../libcurl3-gnutls_7.21.3-1_amd64.deb) ...
Selecting previously deselected package libdrm2.
Unpacking libdrm2 (from .../libdrm2_2.4.23-3_amd64.deb) ...
Selecting previously deselected package libexpat1-dev.
Unpacking libexpat1-dev (from .../libexpat1-dev_2.0.1-7_amd64.deb) ...
Selecting previously deselected package libfftw3-3.
Unpacking libfftw3-3 (from .../libfftw3-3_3.2.2-1_amd64.deb) ...
Selecting previously deselected package libgdcm2.0.
Unpacking libgdcm2.0 (from .../libgdcm2.0_2.0.16-2_amd64.deb) ...
Selecting previously deselected package libgfortran3.
Unpacking libgfortran3 (from .../libgfortran3_4.5.2-4_amd64.deb) ...
Selecting previously deselected package libxfixes3.
Unpacking libxfixes3 (from .../libxfixes3_1%3a4.0.5-1_amd64.deb) ...
Selecting previously deselected package libxdamage1.
Unpacking libxdamage1 (from .../libxdamage1_1%3a1.1.3-1_amd64.deb) ...
Selecting previously deselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.2.0-2_amd64.deb) ...
Selecting previously deselected package libxxf86vm1.
Unpacking libxxf86vm1 (from .../libxxf86vm1_1%3a1.1.1-1_amd64.deb) ...
Selecting previously deselected package libgl1-mesa-glx.
Unpacking libgl1-mesa-glx (from .../libgl1-mesa-glx_7.10-4_amd64.deb) ...
Selecting previously deselected package libgl2ps0.
Unpacking libgl2ps0 (from .../libgl2ps0_1.3.5-2_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_amd64.deb) ...
Selecting previously deselected package libhdf5-serial-1.8.4.
Unpacking libhdf5-serial-1.8.4 (from .../libhdf5-serial-1.8.4_1.8.4-patch1-2_amd64.deb) ...
Selecting previously deselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.44-1_amd64.deb) ...
Selecting previously deselected package libjpeg62.
Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.4-5_amd64.deb) ...
Selecting previously deselected package libinsighttoolkit3.20.
Unpacking libinsighttoolkit3.20 (from .../libinsighttoolkit3.20_3.20.0-8_amd64.deb) ...
Selecting previously deselected package mysql-common.
Unpacking mysql-common (from .../mysql-common_5.1.55-1_all.deb) ...
Selecting previously deselected package libmysqlclient16.
Unpacking libmysqlclient16 (from .../libmysqlclient16_5.1.55-1_amd64.deb) ...
Selecting previously deselected package libnetcdf6.
Unpacking libnetcdf6 (from .../libnetcdf6_1%3a4.1.1-5_amd64.deb) ...
Selecting previously deselected package libibverbs1.
Unpacking libibverbs1 (from .../libibverbs1_1.1.3-2_amd64.deb) ...
Selecting previously deselected package libnuma1.
Unpacking libnuma1 (from .../libnuma1_2.0.5-1_amd64.deb) ...
Selecting previously deselected package libtorque2.
Unpacking libtorque2 (from .../libtorque2_2.4.8+dfsg-9_amd64.deb) ...
Selecting previously deselected package libopenmpi1.3.
Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.3-1_amd64.deb) ...
Selecting previously deselected package libpq5.
Unpacking libpq5 (from .../libpq5_9.0.3-1_amd64.deb) ...
Selecting previously deselected package libqtcore4.
Unpacking libqtcore4 (from .../libqtcore4_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package liblcms1.
Unpacking liblcms1 (from .../liblcms1_1.18.dfsg-1.2+b3_amd64.deb) ...
Selecting previously deselected package libmng1.
Unpacking libmng1 (from .../libmng1_1.0.10-1+b1_amd64.deb) ...
Selecting previously deselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_amd64.deb) ...
Selecting previously deselected package libqtgui4.
Unpacking libqtgui4 (from .../libqtgui4_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libswscale0.
Unpacking libswscale0 (from .../libswscale0_4%3a0.6.1-5_amd64.deb) ...
Selecting previously deselected package libvtk5.6.
Unpacking libvtk5.6 (from .../libvtk5.6_5.6.1-3_amd64.deb) ...
Selecting previously deselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.8-2_amd64.deb) ...
Selecting previously deselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-2_amd64.deb) ...
Selecting previously deselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
Selecting previously deselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.8-1_amd64.deb) ...
Selecting previously deselected package tcl-vtk.
Unpacking tcl-vtk (from .../tcl-vtk_5.6.1-3_amd64.deb) ...
Selecting previously deselected package libkwwidgets1.0.1009.
Unpacking libkwwidgets1.0.1009 (from .../libkwwidgets1.0.1009_1.0.0~cvs20100930-3_amd64.deb) ...
Selecting previously deselected package libmrml1c2a.
Unpacking libmrml1c2a (from .../libmrml1c2a_0.1.14-9+b3_amd64.deb) ...
Selecting previously deselected package libmrml1-dev.
Unpacking libmrml1-dev (from .../libmrml1-dev_0.1.14-9+b3_amd64.deb) ...
Selecting previously deselected package libpython2.6.
Unpacking libpython2.6 (from .../libpython2.6_2.6.6-8+b1_amd64.deb) ...
Selecting previously deselected package libteem1.
Unpacking libteem1 (from .../libteem1_1.10.0.dfsg1-2_amd64.deb) ...
Selecting previously deselected package python-vtk.
Unpacking python-vtk (from .../python-vtk_5.6.1-3_amd64.deb) ...
Selecting previously deselected package libslicer3.
Unpacking libslicer3 (from .../libslicer3_3.6.3~svn16075-1_amd64.deb) ...
Selecting previously deselected package libslicer3-dev.
Unpacking libslicer3-dev (from .../libslicer3-dev_3.6.3~svn16075-1_amd64.deb) ...
dpkg: error processing /var/cache/apt/archives/libslicer3-dev_3.6.3~svn16075-1_amd64.deb (--unpack):
 trying to overwrite '/usr/lib/libMRML.so', which is also in package libmrml1-dev 0.1.14-9+b3
configured to not write apport reports
Processing triggers for man-db ...
Errors were encountered while processing:
 /var/cache/apt/archives/libslicer3-dev_3.6.3~svn16075-1_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)


This is a serious bug as it makes installation fail, and violates
sections 7.6.1 and 10.1 of the policy. An optimal solution would
consist in only one of the packages installing that file, and renaming
or removing the file in the other package. Depending on the
circumstances you might also consider Replace relations or file
diversions. If the conflicting situation cannot be resolved then, as a
last resort, the two packages have to declare a mutual
Conflict. Please take into account that Replaces, Conflicts and
diversions should only be used when packages provide different
implementations for the same functionality.

Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):

  /usr/lib/libMRML.so

This bug is assigned to both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package. You may
also register in the BTS that the other package is affected by the bug.

-Ralf.

PS: for more information about the detection of file overwrite errors
of this kind see http://edos.debian.net/file-overwrites/.

--- End Message ---
--- Begin Message --- 
Source: slicer
Source-Version: 3.6.3~svn16075-2

We believe that the bug you reported is fixed in the latest version of
slicer, which is due to be installed in the Debian FTP archive:

libslicer3-dev_3.6.3~svn16075-2_amd64.deb
  to main/s/slicer/libslicer3-dev_3.6.3~svn16075-2_amd64.deb
libslicer3_3.6.3~svn16075-2_amd64.deb
  to main/s/slicer/libslicer3_3.6.3~svn16075-2_amd64.deb
slicer-data_3.6.3~svn16075-2_all.deb
  to main/s/slicer/slicer-data_3.6.3~svn16075-2_all.deb
slicer_3.6.3~svn16075-2.debian.tar.gz
  to main/s/slicer/slicer_3.6.3~svn16075-2.debian.tar.gz
slicer_3.6.3~svn16075-2.dsc
  to main/s/slicer/slicer_3.6.3~svn16075-2.dsc
slicer_3.6.3~svn16075-2_amd64.deb
  to main/s/slicer/slicer_3.6.3~svn16075-2_amd64.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 615131@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Dominique Belhachemi <domibel@debian.org> (supplier of updated slicer package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Thu, 17 Mar 2011 19:04:51 -0400
Source: slicer
Binary: slicer libslicer3 libslicer3-dev slicer-data
Architecture: source all amd64
Version: 3.6.3~svn16075-2
Distribution: unstable
Urgency: low
Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Dominique Belhachemi <domibel@debian.org>
Description: 
 libslicer3 - software package for visualization and image analysis - runtime
 libslicer3-dev - software package for visualization and image analysis - developme
 slicer     - software package for visualization and image analysis - main appl
 slicer-data - software package for visualization and image analysis - share
Closes: 615131
Changes: 
 slicer (3.6.3~svn16075-2) unstable; urgency=low
 .
   * move libMRML.so* to /usr/lib/Slicer3/  (Closes: #615131)
   * fix a FTBFS on Debian GNU/kfreebsd
Checksums-Sha1: 
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 bae2c637a3843ec8e993bb718dc3cd497e3cbd6a 49079 slicer_3.6.3~svn16075-2.debian.tar.gz
 9c1c7d02ae8ec986ae8be7a548f468493f820db8 109294962 slicer-data_3.6.3~svn16075-2_all.deb
 ee10286693c72284693704ef874a52fa344a764c 14884932 slicer_3.6.3~svn16075-2_amd64.deb
 2506b530d63e3e13cae0c91776067f85d75e700e 35583742 libslicer3_3.6.3~svn16075-2_amd64.deb
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Checksums-Sha256: 
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