Bug#547505: marked as done (libslicer3-dev and libmrml1-dev: error when trying to install together)
Your message dated Thu, 24 Sep 2009 01:33:02 +0000
with message-id <E1MqdCg-0001mv-L1@ries.debian.org>
and subject line Bug#547505: fixed in slicer 3.4.0~svn10438-2
has caused the Debian Bug report #547505,
regarding libslicer3-dev and libmrml1-dev: error when trying to install together
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)
--
547505: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=547505
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: libmrml1-dev,libslicer3-dev
Version: libmrml1-dev/0.1.14-9+b3
Version: libslicer3-dev/3.4.0~svn10438-1
Severity: serious
User: treinen@debian.org
Usertags: edos-file-overwrite
Date: 2009-09-20
Architecture: amd64
Distribution: sid
Hi,
automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:
WARNING: The following packages cannot be authenticated!
x11-common libice6 x11proto-core-dev libice-dev libxau6 libxdmcp6 libxcb1
libx11-data libx11-6 libxau-dev libxdmcp-dev x11proto-input-dev
x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev
libxcb1-dev libx11-dev libxext6 x11proto-xext-dev libxext-dev libxfixes3
libexpat1 libfreetype6 ucf libmagic1 file perl-modules perl defoma
ttf-dejavu-core ttf-dejavu-extra ttf-dejavu fontconfig-config libfontconfig1
libxrender1 libxft2 libc-dev-bin linux-libc-dev libc6-dev libexpat1-dev
zlib1g-dev libfreetype6-dev libpcre3 libglib2.0-0 pkg-config
libfontconfig1-dev x11proto-render-dev libxrender-dev libxft-dev libxss1
x11proto-scrnsaver-dev libxss-dev libxml2 libssh2-1 libcurl3 libdrm2
libfftw3-3 libopenjpeg2 libgdcm2.0 mesa-common-dev libxdamage1 libxxf86vm1
libgl1-mesa-glx libgl1-mesa-dev libglu1-mesa libglu1-mesa-dev libpng12-0
libjpeg62 libtiff4 libinsighttoolkit3.14 libsm6 libxt6 libvtk5.2 tcl8.5
tk8.5 libsm-dev libxt-dev libpng12-dev libvtk5-dev vtk-tcl
libkwwidgets1.0.0908 libmrml1c2a libmrml1-dev libteem1 libslicer3
libslicer3-dev
Extracting templates from packages: 34%
Extracting templates from packages: 68%
Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package x11-common.
(Reading database ... 8832 files and directories currently installed.)
Unpacking x11-common (from .../x11-common_1%3a7.4+4_all.deb) ...
Selecting previously deselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.5-1_amd64.deb) ...
Processing triggers for man-db ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Setting up x11-common (1:7.4+4) ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package x11proto-core-dev.
(Reading database ... 8866 files and directories currently installed.)
Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.15-1_all.deb) ...
Selecting previously deselected package libice-dev.
Unpacking libice-dev (from .../libice-dev_2%3a1.0.5-1_amd64.deb) ...
Selecting previously deselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.5-1_amd64.deb) ...
Selecting previously deselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.2-3_amd64.deb) ...
Selecting previously deselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.4-1_amd64.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.2.2-1_all.deb) ...
Selecting previously deselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.2.2-1_amd64.deb) ...
Selecting previously deselected package libxau-dev.
Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.5-1_amd64.deb) ...
Selecting previously deselected package libxdmcp-dev.
Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.0.2-3_amd64.deb) ...
Selecting previously deselected package x11proto-input-dev.
Unpacking x11proto-input-dev (from .../x11proto-input-dev_1.5.0-2_all.deb) ...
Selecting previously deselected package x11proto-kb-dev.
Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.3-3_all.deb) ...
Selecting previously deselected package xtrans-dev.
Unpacking xtrans-dev (from .../xtrans-dev_1.2.4-1_all.deb) ...
Selecting previously deselected package libpthread-stubs0.
Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.1-2_amd64.deb) ...
Selecting previously deselected package libpthread-stubs0-dev.
Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.1-2_amd64.deb) ...
Selecting previously deselected package libxcb1-dev.
Unpacking libxcb1-dev (from .../libxcb1-dev_1.4-1_amd64.deb) ...
Selecting previously deselected package libx11-dev.
Unpacking libx11-dev (from .../libx11-dev_2%3a1.2.2-1_amd64.deb) ...
Selecting previously deselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.0.4-1_amd64.deb) ...
Selecting previously deselected package x11proto-xext-dev.
Unpacking x11proto-xext-dev (from .../x11proto-xext-dev_7.0.4-2_all.deb) ...
Selecting previously deselected package libxext-dev.
Unpacking libxext-dev (from .../libxext-dev_2%3a1.0.4-1_amd64.deb) ...
Selecting previously deselected package libxfixes3.
Unpacking libxfixes3 (from .../libxfixes3_1%3a4.0.3-2_amd64.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-4_amd64.deb) ...
Selecting previously deselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.3.9-5_amd64.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../archives/ucf_3.0022_all.deb) ...
Moving old data out of the way
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.03-1_amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../archives/file_5.03-1_amd64.deb) ...
Selecting previously deselected package perl-modules.
Unpacking perl-modules (from .../perl-modules_5.10.0-25_all.deb) ...
Selecting previously deselected package perl.
Unpacking perl (from .../perl_5.10.0-25_amd64.deb) ...
Selecting previously deselected package defoma.
Unpacking defoma (from .../defoma_0.11.10-1_all.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.30-1_all.deb) ...
Selecting previously deselected package ttf-dejavu-extra.
Unpacking ttf-dejavu-extra (from .../ttf-dejavu-extra_2.30-1_all.deb) ...
Selecting previously deselected package ttf-dejavu.
Unpacking ttf-dejavu (from .../ttf-dejavu_2.30-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.6.0-4_all.deb) ...
Selecting previously deselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.6.0-4_amd64.deb) ...
Selecting previously deselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.4-2_amd64.deb) ...
Selecting previously deselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.1.13-3_amd64.deb) ...
Selecting previously deselected package libc-dev-bin.
Unpacking libc-dev-bin (from .../libc-dev-bin_2.9-26_amd64.deb) ...
Selecting previously deselected package linux-libc-dev.
Unpacking linux-libc-dev (from .../linux-libc-dev_2.6.30-7_amd64.deb) ...
Selecting previously deselected package libc6-dev.
Unpacking libc6-dev (from .../libc6-dev_2.9-26_amd64.deb) ...
Selecting previously deselected package libexpat1-dev.
Unpacking libexpat1-dev (from .../libexpat1-dev_2.0.1-4_amd64.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.3.dfsg-15_amd64.deb) ...
Selecting previously deselected package libfreetype6-dev.
Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.3.9-5_amd64.deb) ...
Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_7.8-2_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.20.5-1_amd64.deb) ...
Selecting previously deselected package pkg-config.
Unpacking pkg-config (from .../pkg-config_0.22-1_amd64.deb) ...
Selecting previously deselected package libfontconfig1-dev.
Unpacking libfontconfig1-dev (from .../libfontconfig1-dev_2.6.0-4_amd64.deb) ...
Selecting previously deselected package x11proto-render-dev.
Unpacking x11proto-render-dev (from .../x11proto-render-dev_2%3a0.9.3-2_all.deb) ...
Selecting previously deselected package libxrender-dev.
Unpacking libxrender-dev (from .../libxrender-dev_1%3a0.9.4-2_amd64.deb) ...
Selecting previously deselected package libxft-dev.
Unpacking libxft-dev (from .../libxft-dev_2.1.13-3_amd64.deb) ...
Selecting previously deselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.1.3-1_amd64.deb) ...
Selecting previously deselected package x11proto-scrnsaver-dev.
Unpacking x11proto-scrnsaver-dev (from .../x11proto-scrnsaver-dev_1.1.0.0-2_all.deb) ...
Selecting previously deselected package libxss-dev.
Unpacking libxss-dev (from .../libxss-dev_1%3a1.1.3-1_amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.4.dfsg-2_amd64.deb) ...
Selecting previously deselected package libssh2-1.
Unpacking libssh2-1 (from .../libssh2-1_1.2-1_amd64.deb) ...
Selecting previously deselected package libcurl3.
Unpacking libcurl3 (from .../libcurl3_7.19.5-1.1_amd64.deb) ...
Selecting previously deselected package libdrm2.
Unpacking libdrm2 (from .../libdrm2_2.4.13-1_amd64.deb) ...
Selecting previously deselected package libfftw3-3.
Unpacking libfftw3-3 (from .../libfftw3-3_3.2.1-2.1_amd64.deb) ...
Selecting previously deselected package libopenjpeg2.
Unpacking libopenjpeg2 (from .../libopenjpeg2_1.3+dfsg-4_amd64.deb) ...
Selecting previously deselected package libgdcm2.0.
Unpacking libgdcm2.0 (from .../libgdcm2.0_2.0.12-11_amd64.deb) ...
Selecting previously deselected package mesa-common-dev.
Unpacking mesa-common-dev (from .../mesa-common-dev_7.5.1-1_amd64.deb) ...
Selecting previously deselected package libxdamage1.
Unpacking libxdamage1 (from .../libxdamage1_1%3a1.1.1-4_amd64.deb) ...
Selecting previously deselected package libxxf86vm1.
Unpacking libxxf86vm1 (from .../libxxf86vm1_1%3a1.0.2-1_amd64.deb) ...
Selecting previously deselected package libgl1-mesa-glx.
Unpacking libgl1-mesa-glx (from .../libgl1-mesa-glx_7.5.1-1_amd64.deb) ...
Selecting previously deselected package libgl1-mesa-dev.
Unpacking libgl1-mesa-dev (from .../libgl1-mesa-dev_7.5.1-1_amd64.deb) ...
Selecting previously deselected package libglu1-mesa.
Unpacking libglu1-mesa (from .../libglu1-mesa_7.5.1-1_amd64.deb) ...
Selecting previously deselected package libglu1-mesa-dev.
Unpacking libglu1-mesa-dev (from .../libglu1-mesa-dev_7.5.1-1_amd64.deb) ...
Selecting previously deselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.39-1_amd64.deb) ...
Selecting previously deselected package libjpeg62.
Unpacking libjpeg62 (from .../libjpeg62_6b-15_amd64.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.1-1_amd64.deb) ...
Selecting previously deselected package libinsighttoolkit3.14.
Unpacking libinsighttoolkit3.14 (from .../libinsighttoolkit3.14_3.14.0-2_amd64.deb) ...
Selecting previously deselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.1.1-1_amd64.deb) ...
Selecting previously deselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.0.6-1_amd64.deb) ...
Selecting previously deselected package libvtk5.2.
Unpacking libvtk5.2 (from .../libvtk5.2_5.2.1-11_amd64.deb) ...
Selecting previously deselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.7-1_amd64.deb) ...
Selecting previously deselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.7-1_amd64.deb) ...
Selecting previously deselected package libsm-dev.
Unpacking libsm-dev (from .../libsm-dev_2%3a1.1.1-1_amd64.deb) ...
Selecting previously deselected package libxt-dev.
Unpacking libxt-dev (from .../libxt-dev_1%3a1.0.6-1_amd64.deb) ...
Selecting previously deselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.39-1_amd64.deb) ...
Selecting previously deselected package libvtk5-dev.
Unpacking libvtk5-dev (from .../libvtk5-dev_5.2.1-11_amd64.deb) ...
Selecting previously deselected package vtk-tcl.
Unpacking vtk-tcl (from .../vtk-tcl_5.2.1-11_amd64.deb) ...
Selecting previously deselected package libkwwidgets1.0.0908.
Unpacking libkwwidgets1.0.0908 (from .../libkwwidgets1.0.0908_1.0.0~cvs20090825-2_amd64.deb) ...
Selecting previously deselected package libmrml1c2a.
Unpacking libmrml1c2a (from .../libmrml1c2a_0.1.14-9+b3_amd64.deb) ...
Selecting previously deselected package libmrml1-dev.
Unpacking libmrml1-dev (from .../libmrml1-dev_0.1.14-9+b3_amd64.deb) ...
Selecting previously deselected package libteem1.
Unpacking libteem1 (from .../libteem1_1.10.0.dfsg1-2_amd64.deb) ...
Selecting previously deselected package libslicer3.
Unpacking libslicer3 (from .../libslicer3_3.4.0~svn10438-1_amd64.deb) ...
Selecting previously deselected package libslicer3-dev.
Unpacking libslicer3-dev (from .../libslicer3-dev_3.4.0~svn10438-1_amd64.deb) ...
dpkg: error processing /var/cache/apt/archives/libslicer3-dev_3.4.0~svn10438-1_amd64.deb (--unpack):
trying to overwrite '/usr/lib/libMRML.so', which is also in package libmrml1-dev 0:0.1.14-9+b3
Processing triggers for man-db ...
Errors were encountered while processing:
/var/cache/apt/archives/libslicer3-dev_3.4.0~svn10438-1_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
This is a serious bug as it makes installation fail. Possible
solutions are to have the two packages conflict, to rename the common
file in one of the two packages, or to remove the file from one
package and have this package depend on the other package. File
diversions or a Replace relation are another possibility.
Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):
usr/lib/libMRML.so
This bug is assigned to both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package.
-Ralf.
--- End Message ---
--- Begin Message ---
Source: slicer
Source-Version: 3.4.0~svn10438-2
We believe that the bug you reported is fixed in the latest version of
slicer, which is due to be installed in the Debian FTP archive:
libslicer3-dev_3.4.0~svn10438-2_i386.deb
to pool/main/s/slicer/libslicer3-dev_3.4.0~svn10438-2_i386.deb
libslicer3_3.4.0~svn10438-2_i386.deb
to pool/main/s/slicer/libslicer3_3.4.0~svn10438-2_i386.deb
slicer-data_3.4.0~svn10438-2_all.deb
to pool/main/s/slicer/slicer-data_3.4.0~svn10438-2_all.deb
slicer_3.4.0~svn10438-2.diff.gz
to pool/main/s/slicer/slicer_3.4.0~svn10438-2.diff.gz
slicer_3.4.0~svn10438-2.dsc
to pool/main/s/slicer/slicer_3.4.0~svn10438-2.dsc
slicer_3.4.0~svn10438-2_i386.deb
to pool/main/s/slicer/slicer_3.4.0~svn10438-2_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 547505@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dominique Belhachemi <domibel@cs.tu-berlin.de> (supplier of updated slicer package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 21 Sep 2009 14:16:02 -0400
Source: slicer
Binary: slicer libslicer3 libslicer3-dev slicer-data
Architecture: source all i386
Version: 3.4.0~svn10438-2
Distribution: unstable
Urgency: low
Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Dominique Belhachemi <domibel@cs.tu-berlin.de>
Description:
libslicer3 - software package for visualization and image analysis - runtime
libslicer3-dev - software package for visualization and image analysis - developme
slicer - software package for visualization and image analysis - main appl
slicer-data - software package for visualization and image analysis - share
Closes: 547505
Changes:
slicer (3.4.0~svn10438-2) unstable; urgency=low
.
* debian/control: Conflicts entry added (Closes: #547505)
libslicer3-dev conflicts with libmrml1-dev now
* Using CMake's include_directories instead of include
to fix a build error on kFreeBSD
* quilt patch file added to cherry pick upstream's SVN changes
Checksums-Sha1:
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f7d3019ff3e2962874acceede3270d9bd8700d49 45820450 slicer-data_3.4.0~svn10438-2_all.deb
e86cb6777da8ead582be1f827c03e001d4064d91 23066936 slicer_3.4.0~svn10438-2_i386.deb
b7d4370860ec25d765122a753f2caad48fcffd99 25455144 libslicer3_3.4.0~svn10438-2_i386.deb
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Files:
ca8f32d811b74d5bf12fdb0ab5a2624f 1755 graphics optional slicer_3.4.0~svn10438-2.dsc
de46e3e023e40443a5a22a8ca4e1984b 21942 graphics optional slicer_3.4.0~svn10438-2.diff.gz
aa2623079714fa055533cddbde3f4191 45820450 doc optional slicer-data_3.4.0~svn10438-2_all.deb
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d495d6baee582410ca94f07a15658125 25455144 libs optional libslicer3_3.4.0~svn10438-2_i386.deb
0e7a3082031b24d3711cad846a67d709 441708 libdevel optional libslicer3-dev_3.4.0~svn10438-2_i386.deb
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--- End Message ---
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