Re: No clue yet for building snakemake since there are two dirs in .pybuild
Hi Andreas,
>
"/build/snakemake-5.1.5/.pybuild/cpython3_3.6_snakemake/build/tests/tests.py",
> line 22, in <module>
> raise Exception("snakemake not in PATH. For testing, install snakemake
> with "
> Exception: snakemake not in PATH. For testing, install snakemake with 'pip
> install -e .'. You should do this in a separate environment (via conda or
> virtualenv).
>
> ----------------------------------------------------------------------
> Ran 4 tests in 0.227s
>
> FAILED (errors=1)
> E: pybuild pybuild:336: test: plugin distutils failed with: exit code=1:
> cd /build/snakemake-5.1.5/.pybuild/cpython3_3.6_snakemake/build; python3.6
> -m nose tests
>
>
>
> I think the cause of the issue is that there are two dirs in .pybuild:
>
>
> # ls -l /build/snakemake-5.1.5/.pybuild
> total 8
> drwxr-xr-x 3 pbuilder pbuilder 4096 Jun 26 09:20 cpython3_3.6
> drwxr-xr-x 3 pbuilder pbuilder 4096 Jun 26 09:20 cpython3_3.6_snakemake
>
>
> and the latter contains all the installed files while the former is
> empty. How can I prevent this?
Deleting PYBUILD_NAME from your debian/rules is sufficient to fix that. When
set, that sets HOME to the above directory and the build system for some
reason starts using that.
And no, I can't explain why that is...
There are still 3 test failures; the one I glanced at was a missing build-
dep on python3-networkx (and I didn't look further).
cheers
Stuart
--
Stuart Prescott http://www.nanonanonano.net/ stuart@nanonanonano.net
Debian Developer http://www.debian.org/ stuart@debian.org
GPG fingerprint 90E2 D2C1 AD14 6A1B 7EBB 891D BBC1 7EBB 1396 F2F7
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