[Pkg-octave-devel] Bug#847974: marked as done (octave: wrong size for octave_hdf5_id wrt hdf5 1.10)
Your message dated Sat, 14 Jan 2017 11:52:39 +0000
with message-id <E1cSMsx-000FOK-Fs@fasolo.debian.org>
and subject line Bug#847974: fixed in octave 4.0.3-3
has caused the Debian Bug report #847974,
regarding octave: wrong size for octave_hdf5_id wrt hdf5 1.10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)
--
847974: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=847974
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
- To: Debian BTS <submit@bugs.debian.org>
- Subject: xmds2: FTBFS in stretch
- From: Santiago Vila <sanvila@debian.org>
- Date: Mon, 12 Dec 2016 17:42:37 +0000
- Message-id: <E1cGUcX-00012S-Lx@moszumanska.debian.org>
Package: src:xmds2
Version: 2.2.2+dfsg-2
Severity: serious
Dear maintainer:
I tried to build this package in stretch with "dpkg-buildpackage -A"
(which is what the "Arch: all" autobuilder would do to build it)
but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --with python2
dh_testdir -i
dh_update_autotools_config -i
dh_auto_configure -i
dh_auto_build -i
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/xmds2-2.2.2+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/xmds2-2.2.2+dfsg/xpdeint'
Setting top to : /<<BUILDDIR>>/xmds2-2.2.2+dfsg/xpdeint
Setting out to : /<<BUILDDIR>>/xmds2-2.2.2+dfsg/xpdeint
Setting top == out (remember to use "update_outputs")
Checking for the Cheetah python module : ok
[... snipped ...]
Copyright 2000-2014 Graham Dennis, Joseph Hope, Mattias Johnsson
and the xmds team
Generating source code...
... done
Compiling simulation...
... done. Type './lorenz' to run.
Segment 1: minimum timestep: 1.296096e-05 maximum timestep: 4.000000e-03
Attempted 9669 steps, 0.00% steps failed.
Generating output for lorenz
xsil2graphics2 from xmds2 version 2.2.2 "XMDS2 is a game of two halves" (Debian package 2.2.2+dfsg-2)
Generating output for MATLAB/Octave.
Writing import script for 'lorenz.xsil' to 'lorenz.m'.
octave: X11 DISPLAY environment variable not set
octave: disabling GUI features
warning: the size of octave_hdf5_id is smaller than the size of HDF5 hid_t
warning: called from
lorenz.m at line 2 column 3
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140615878277440:
#000: ../../../src/H5G.c line 464 in H5Gopen2(): not a location
major: Invalid arguments to routine
minor: Inappropriate type
#001: ../../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140615878277440:
#000: ../../../src/H5Gdeprec.c line 796 in H5Gget_num_objs(): not a location ID
major: Invalid arguments to routine
minor: Inappropriate type
#001: ../../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140615878277440:
#000: ../../../src/H5G.c line 725 in H5Gclose(): not a group
major: Invalid arguments to routine
minor: Inappropriate type
error: structure has no member 't'
error: called from
lorenz.m at line 3 column 8
error: writing file '/sbuild-nonexistent/.octave_hist': No such file or directory
error: ignoring octave_execution_exception while preparing to exit
debian/rules:15: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/xmds2-2.2.2+dfsg'
debian/rules:9: recipe for target 'build-indep' failed
make: *** [build-indep] Error 2
dpkg-buildpackage: error: debian/rules build-indep gave error exit status 2
--------------------------------------------------------------------------------
The build history I keep is like this:
Status: successful xmds2_2.2.2+dfsg-2_amd64-20161118T125207Z
Status: successful xmds2_2.2.2+dfsg-2_amd64-20161123T025916Z
Status: successful xmds2_2.2.2+dfsg-2_amd64-20161128T001945Z
Status: successful xmds2_2.2.2+dfsg-2_amd64-20161202T231309Z
Status: failed xmds2_2.2.2+dfsg-2_amd64-20161207T065906Z
Status: failed xmds2_2.2.2+dfsg-2_amd64-20161208T214652Z
Status: failed xmds2_2.2.2+dfsg-2_amd64-20161208T214639Z
Status: failed xmds2_2.2.2+dfsg-2_amd64-20161208T214702Z
Something happened in stretch between 2016-12-02 and 2016-12-07
that made this package to FTBFS.
Please tell me if you need a full build log, and I will attach it.
(Using sbuild on a single CPU virtual machine, it always fails for me,
on different machines, so it should be easy to reproduce).
Thanks.
--- End Message ---
--- Begin Message ---
Source: octave
Source-Version: 4.0.3-3
We believe that the bug you reported is fixed in the latest version of
octave, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 847974@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sébastien Villemot <sebastien@debian.org> (supplier of updated octave package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 14 Jan 2017 10:45:31 +0100
Source: octave
Binary: octave octave-common octave-doc octave-htmldoc octave-info liboctave3v5 liboctave-dev
Architecture: source
Version: 4.0.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Octave Group <pkg-octave-devel@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebastien@debian.org>
Description:
liboctave-dev - Development files for the GNU Octave language
liboctave3v5 - Shared libraries of the GNU Octave language
octave - GNU Octave language for numerical computations
octave-common - architecture-independent files for octave
octave-doc - PDF documentation on the GNU Octave language
octave-htmldoc - HTML documentation on the GNU Octave language
octave-info - GNU Info documentation on the GNU Octave language
Closes: 847974
Changes:
octave (4.0.3-3) unstable; urgency=medium
.
[ Rafael Laboissiere ]
* d/s/lintian-overrides: Drop unused override
* d/u/metadata: Add citation
* d/octave.lintian-overrides: Drop unused overrides
* d/watch: Add .gz as a possible extension for the upstream tarball
.
[ Sébastien Villemot ]
* d/watch: bump to format version 4.
* New patch octave_hdf5_id.patch to fix octave_hdf5_id type.
It should be int64_t when building against hdf5 1.10.
Thanks to Gilles Filippini (Closes: #847974)
Checksums-Sha1:
844e9506472df4653fa4163058421b897a55200c 3088 octave_4.0.3-3.dsc
9f68a53aa24cc68f867bef5dbe2b34a26ca79189 63784 octave_4.0.3-3.debian.tar.xz
Checksums-Sha256:
27d16d20495ab73173288216188ab00db8629d89d437c101ecb3234ae8f13186 3088 octave_4.0.3-3.dsc
b4882a940069fc0e7702df92952e18036e1490a9b2a7e5c4fdecb8820f5f5a90 63784 octave_4.0.3-3.debian.tar.xz
Files:
e8c6b0384df09583c660375bed150c73 3088 math optional octave_4.0.3-3.dsc
ae6ff5d60943ed29e6d7108ba947257a 63784 math optional octave_4.0.3-3.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=nSHx
-----END PGP SIGNATURE-----
--- End Message ---
Reply to: