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[Pkg-octave-devel] Bug#411863: marked as done (octave2.9 eats up all memory)



Your message dated Fri, 23 Feb 2007 14:17:03 +0000
with message-id <E1HKbEN-0000Gg-PC@ries.debian.org>
and subject line Bug#411863: fixed in octave2.9 2.9.9-8etch1
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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Debian bug tracking system administrator
(administrator, Debian Bugs database)

--- Begin Message ---
Package: octave2.9
Version: 2.9.9-8
Severity: important
Tags: fixed-upstream

The following one-liner in Octave 2.9 uses up all memory until the OOM killer
kicks in:

  inline ("[x]")

The patch from 
  https://www.cae.wisc.edu/pipermail/bug-octave/2006-October/000903.html
fixes this. 

A more complicated example from octave2.9-forge's unit tests has the same
problem:

=======================================================================

clear all
A=[ 1, 4, 2, 5,54,55,61,62;
    3, 6, 3, 1,58,53,67,65;
    3, 6, 3, 1,58,53,67,65;
    3, 6, 3, 1,58,53,67,65;
   23,42,42,42,99,99,99,99;
   27,42,42,42,99,99,99,99;
   23,22,26,25,99,99,99,99;
   22,22,24,22,99,99,99,99];

first_eq=inline("(A(1,1,:)!=(54*ones(1,1,[size(A),1](3))))(:)","A");
=======================================================================

This means the unit tests can't be run on the buildds.

  Thomas

-- System Information:
Debian Release: 4.0
  APT prefers unstable
  APT policy: (700, 'unstable')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.18-4-686
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)

Versions of packages octave2.9 depends on:
ii  atlas3-base [liblapack.s 3.6.0-20.6      Automatically Tuned Linear Algebra
ii  atlas3-sse2 [liblapack.s 3.6.0-20.6      Automatically Tuned Linear Algebra
ii  fftw3                    3.1.2-1         library for computing Fast Fourier
ii  lapack3 [liblapack.so.3] 3.0.20000531a-6 library of linear algebra routines
ii  libc6                    2.3.6.ds1-12    GNU C Library: Shared libraries
ii  libgcc1                  1:4.1.1-21      GCC support library
ii  libgfortran1             4.1.1-21        Runtime library for GNU Fortran ap
ii  libglpk0                 4.11-2          linear programming kit (shared lib
ii  libhdf5-serial-1.6.5-0 [ 1.6.5-3         Hierarchical Data Format 5 (HDF5) 
ii  libncurses5              5.5-5           Shared libraries for terminal hand
ii  libpcre3                 6.7-1           Perl 5 Compatible Regular Expressi
ii  libreadline5             5.2-2           GNU readline and history libraries
ii  libstdc++6               4.1.1-21        The GNU Standard C++ Library v3
ii  libufsparse              1.2-7           collection of libraries for comput
ii  refblas3 [libblas.so.3]  1.2-8           Basic Linear Algebra Subroutines 3
ii  texinfo                  4.8.dfsg.1-4    Documentation system for on-line i
ii  zlib1g                   1:1.2.3-13      compression library - runtime

octave2.9 recommends no packages.

-- no debconf information


--- End Message ---
--- Begin Message ---
Source: octave2.9
Source-Version: 2.9.9-8etch1

We believe that the bug you reported is fixed in the latest version of
octave2.9, which is due to be installed in the Debian FTP archive:

octave2.9-doc_2.9.9-8etch1_all.deb
  to pool/main/o/octave2.9/octave2.9-doc_2.9.9-8etch1_all.deb
octave2.9-emacsen_2.9.9-8etch1_all.deb
  to pool/main/o/octave2.9/octave2.9-emacsen_2.9.9-8etch1_all.deb
octave2.9-headers_2.9.9-8etch1_i386.deb
  to pool/main/o/octave2.9/octave2.9-headers_2.9.9-8etch1_i386.deb
octave2.9-htmldoc_2.9.9-8etch1_all.deb
  to pool/main/o/octave2.9/octave2.9-htmldoc_2.9.9-8etch1_all.deb
octave2.9-info_2.9.9-8etch1_all.deb
  to pool/main/o/octave2.9/octave2.9-info_2.9.9-8etch1_all.deb
octave2.9_2.9.9-8etch1.diff.gz
  to pool/main/o/octave2.9/octave2.9_2.9.9-8etch1.diff.gz
octave2.9_2.9.9-8etch1.dsc
  to pool/main/o/octave2.9/octave2.9_2.9.9-8etch1.dsc
octave2.9_2.9.9-8etch1_i386.deb
  to pool/main/o/octave2.9/octave2.9_2.9.9-8etch1_i386.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 411863@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Rafael Laboissiere <rafael@debian.org> (supplier of updated octave2.9 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.7
Date: Fri, 23 Feb 2007 10:47:51 +0100
Source: octave2.9
Binary: octave2.9-headers octave2.9-info octave2.9-htmldoc octave2.9 octave2.9-emacsen octave2.9-doc
Architecture: source i386 all
Version: 2.9.9-8etch1
Distribution: unstable
Urgency: low
Maintainer: Debian Octave Group <pkg-octave-devel@lists.alioth.debian.org>
Changed-By: Rafael Laboissiere <rafael@debian.org>
Description: 
 octave2.9  - GNU Octave language for numerical computations (2.9 branch)
 octave2.9-doc - PDF documentation on the GNU Octave language (2.9 branch)
 octave2.9-emacsen - Emacs support for the GNU Octave language (2.9 branch)
 octave2.9-headers - header files for the GNU Octave language (2.9 branch)
 octave2.9-htmldoc - HTML documentation on the GNU Octave language (2.9 branch)
 octave2.9-info - GNU Info documentation on the GNU Octave language (2.9 branch)
Closes: 411863
Changes: 
 octave2.9 (2.9.9-8etch1) unstable; urgency=low
 .
   * This release is intended for the testing (etch) distribution.  It is
     coordinated with the release 2006.07.09+dfsg1-8 of octave2.9-forge,
     necessary for fixing Bug#410463.  The fix for this bug revealed a
     nasty bug in Octave related to the parsing of inline functions.  File
     debian/patches/50_parse-inline-brackets.dpatch fixes it (closes:
     #411863). This patch was proposed by the upstream author, see
     http://www.cae.wisc.edu/pipermail/bug-octave/2006-October/000903.html
 .
   * Tighten build-dependency on glpk and libglpk0 to << 4.15, to avoid
     problems with the new glpk 4.15 package now in experimental.
Files: 
 9e063ac793c4a42877e1c502bbc56594 1124 math optional octave2.9_2.9.9-8etch1.dsc
 9afdfe32c1e35c42b897d5f1b3114beb 61172 math optional octave2.9_2.9.9-8etch1.diff.gz
 47198b38acc335032537c965baa716a3 7475116 math optional octave2.9_2.9.9-8etch1_i386.deb
 479812be93a16be9e639f2e308d9d56a 344298 math optional octave2.9-headers_2.9.9-8etch1_i386.deb
 6bf6bbb7237b91ae3bb8a73d0ada95a5 2183202 doc optional octave2.9-doc_2.9.9-8etch1_all.deb
 80371426d3971a50cbb3946b7e0b27cd 521068 math optional octave2.9-htmldoc_2.9.9-8etch1_all.deb
 9ea5b01d3ed34607815c90267f0df9c2 82846 math optional octave2.9-emacsen_2.9.9-8etch1_all.deb
 d951d1b69895bcb4edcb236021561f74 358366 math optional octave2.9-info_2.9.9-8etch1_all.deb

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--- End Message ---

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