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Re: Cmake error in diamond-aligner: pthreads - not found



On Fri, Mar 27, 2020 at 07:24:38AM -0700, Matthew Fernandez wrote:
> Hi Andreas,
> 
> I can’t reproduce this either, but in case your subject was hinting at a
> suspected cause, I don’t think this is it. The output shows CMake
> successfully finding Pthreads.
But the build fails with "/usr/bin/ld.gold: error: cannot find -lpthreads"

> The line numbers don’t make much sense to
> me; there is no else statement on line 69, and CMakeLists.txt is only
> 199 lines long. The final error almost looks like it’s somehow
> encountered the targets at both line 174 and 179, or its somehow
> recursively parsing the same CMakeLists.txt again. Maybe there’s
> something not right in the CMake install on this build machine?
Have you checked that before or after applying patches?
https://salsa.debian.org/med-team/diamond-aligner/-/blob/master/debian/patches/multi_arch
was broken in the "Refresh patches" commit 434c6968.


-- 
WBR, wRAR

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