On 3/27/20 9:44 AM, Andrey Rahmatullin wrote: > On Fri, Mar 27, 2020 at 07:24:38AM -0700, Matthew Fernandez wrote: >> Hi Andreas, >> >> I can’t reproduce this either, but in case your subject was hinting at a >> suspected cause, I don’t think this is it. The output shows CMake >> successfully finding Pthreads. > But the build fails with "/usr/bin/ld.gold: error: cannot find -lpthreads" > >> The line numbers don’t make much sense to >> me; there is no else statement on line 69, and CMakeLists.txt is only >> 199 lines long. The final error almost looks like it’s somehow >> encountered the targets at both line 174 and 179, or its somehow >> recursively parsing the same CMakeLists.txt again. Maybe there’s >> something not right in the CMake install on this build machine? > Have you checked that before or after applying patches? > https://salsa.debian.org/med-team/diamond-aligner/-/blob/master/debian/patches/multi_arch > was broken in the "Refresh patches" commit 434c6968. > > Looks like two of the patches were actually applied upstream and can be dropped: - multi_arch https://github.com/bbuchfink/diamond/commit/2248fefb362e931ce1cee4d9292efe8d1499f225 - fix_i386_and_s390x https://github.com/bbuchfink/diamond/commit/aea535c07e09fd41c5ab48ae72b6901d01d8decb I've done this via gbp pq here: https://salsa.debian.org/med-team/diamond-aligner/-/merge_requests/2
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