On Tue, Mar 29, 2016 at 09:18:50PM +0200, Andreas Tille wrote: > Hi, > > I'm trying to package seer[1] for the Debian Med team. Upstream provides a > simple Makefile which is probably the cause why the libraries for linking > are not found properly so it ends up in > > ... > g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -I/nonexistent/software/include -I../gzstream -I../dlib -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -Wl,-z,relro sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerFilter.o seerIO.o seerChiFilter.o seerMain.o seerCmdLine.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -Wl,-z,relro -o seer > /usr/bin/ld: cannot find -lhdf5 > /usr/bin/ld: cannot find -lgzstream > /usr/bin/ld: cannot find -lboost_program_options > collect2: error: ld returned 1 exit status But do you actually have those libs installed? -- WBR, wRAR
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