On Thursday, April 10, 2014 15:30:21 Alex Mestiashvili wrote:
Dear mentors,
I would greatly appreciate if somebody would help with the #733352, I've
spent a couple of hours trying to resolve the issue but my cpp skills
are rather poor.
Thank you,
Alex
The patch below deals with one of the compile errors. I don't know if just
hiding the const modifier is better than pushing const-ness further into
tophat.
Unfortunately the next const error I get is even worse. Const-ness seems to
get flipped between appendValue and trying to create a seqan::Gaps...
Diane
diff --git a/src/segment_juncs.cpp b/src/segment_juncs.cpp
index e3acc46..d73e0d6 100644
--- a/src/segment_juncs.cpp
+++ b/src/segment_juncs.cpp
@@ -2056,8 +2056,8 @@ void juncs_from_ref_segs(RefSequenceTable& rt,
MotifMap ims;
- seqan::DnaStringReverseComplement rev_donor_dinuc(donor_dinuc);
- seqan::DnaStringReverseComplement rev_acceptor_dinuc(acceptor_dinuc);
+ seqan::DnaStringReverseComplement
rev_donor_dinuc(const_cast<DnaString&>(donor_dinuc));
+ seqan::DnaStringReverseComplement
rev_acceptor_dinuc(const_cast<DnaString&>(acceptor_dinuc));
if (talkative)
fprintf(stderr, "Collecting potential splice sites in islands\n");