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Bug#694632: marked as done (RFS: prime-phylo/1.0.10-1 [ITP])

Your message dated Tue, 18 Dec 2012 16:49:59 +0000
with message-id <20121218164958.GA5229@master.debian.org>
and subject line RFS: prime-phylo/1.0.10-1 [ITP]
has caused the Debian Bug report #694632,
regarding RFS: prime-phylo/1.0.10-1 [ITP]
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
694632: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=694632
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: sponsorship-requests
Severity: wishlist

Dear mentors,

I am looking for a sponsor for my new package "prime-phylo"

* Package name    : prime-phylo
  Version         : 1.0.10-1
  Upstream Author : Lars Arvestad<arve@csc.kth.se>, Bengt
Sennblad<bengt.sennblad@ki.se> and others
* URL             : http://prime.sbc.su.se
* License         : GPL-3
  Programming Lang: C++
  Section         : science

It builds the binary package:

  prime-phylo - bayesian estimation of gene trees taking the species
tree into account

To access further information about this package, please visit the
following URL:

http://mentors.debian.net/package/prime-phylo


Alternatively, one can download the package with dget using this command:

  dget -x http://mentors.debian.net/debian/pool/main/p/prime-phylo/prime-phylo_1.0.10-1.dsc

The URL for the upstream project homepage is: http://prime.sbc.su.se

The upstream name PrIME is an acronym for Probabilistic Integrated
Models of Evolution.
The package supports inference of evolutionary parameters in a
Bayesian framework using
Markov chain Monte Carlo simulation. A distinguishing feature of PrIME
is that the species
tree is taken into account when analyzing gene trees.

A scientific description of PrIME has been published in this scientific paper:
  Åkerborg, Ö., Sennblad, B., Arvestad, L., & Lagergren, J. (2009).
  Simultaneous Bayesian gene tree reconstruction and reconciliation analysis.
  Proceedings of the National Academy of Sciences, 106(14), 5714-5719.
  doi:10.1073/pnas.0806251106
  http://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?retmode=ref&cmd=prlinks&dbfrom=pubmed&id=19299507

There are some existing Debian packages that provide some of the
functionality also given by prime-phylo:

  fastdnaml
  fasttree
  phyml
  raxml
  tree-puzzle

but none provide the same functionality.

I previously sent an ITP bug report for prime-phylo
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=684039

Should I have replied to that bug report instead of sending this one?
(This is my first package submission)

Cheers,
Erik Sjölund

--- End Message ---
--- Begin Message --- 
I'm closing this RFS because it's about version 1.0.10-1 while version 1.0.11-1
is in NEW.  I see that the versions at mentors are all older than 1.0.11-1 so
please remove them.
http://mentors.debian.net/package/prime-phylo

--- End Message ---
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