Re: Package fails to build on i386 with "undefined reference to"

[Jakub Wilk <jwilk@debian.org>]

* Carlos Borroto <carlos.borroto@gmail.com>, 2012-01-17, 13:45:
> I'm working in a tool named TopHat[1]. It builds correctly on amd64:
> https://launchpadlibrarian.net/89809979/buildlog_ubuntu-oneiric-amd64.tophat_1.4.0-1~oneiric2_BUILDING.txt.gz
>
> But fails on i386:
> https://launchpadlibrarian.net/89813979/buildlog_ubuntu-oneiric-i386.tophat_1.4.0-1~oneiric2_FAILEDTOBUILD.txt.gz
>
> The same happens in a local cowbuilder environment for Debian Sid. The
> relevant part seems to be:
> g++ -Wall -Wno-strict-aliasing -march=i686 -O3 -g -O2 -DNDEBUG
> -I/usr/include/seqan -Wall -Wno-strict-aliasing -march=i686 -O3 -g -O2
> -DNDEBUG   -Wl,-Bsymbolic-functions -L/usr/lib -o gtf_to_fasta
> GTFToFasta.o FastaTools.o ../src/libtophat.a libgc.a -lbam -lz -lz
> GTFToFasta.o: In function `GFaSeqGet':
> /build/buildd/tophat-1.4.0/src/GFaSeqGet.h:66: undefined reference to
> `GFaSeqGet::finit(char const*, long, bool)'
> collect2: ld returned 1 exit status
> make[3]: *** [gtf_to_fasta] Error 1

Providing a link to the source package would be helpful.

--
Jakub Wilk