Aloha!
I started to look this package. It's not so simply :P.
I started to look test_subcmd_06_plot.py, but I began to suspect that
the tests depend on each other, but I'm not sure, anyway I debuged
test_subcmd_04_anim,py and I looked that in pyani/run_multiprocessing.py(147)multiprocessing_run()
we have this error:
```
CompletedProcess(args='delta_filter_wrapper.py delta-filter -1 tests/test_output/subcmd_anim/nucmer_output/GCF_000331065.1_ASM33106v1_genomic/GCF_000331065.1_ASM33106v1_genomic_vs_GCF_000973545.1_ASM97354v1_genomic.delta tests/test_output/subcmd_anim/nucmer_output/GCF_000331065.1_ASM33106v1_genomic/GCF_000331065.1_ASM33106v1_genomic_vs_GCF_000973545.1_ASM97354v1_genomic.filter', returncode=127, stdout=b'', stderr=b'/bin/sh: 1: delta_filter_wrapper.py: not found\n')
```
So seems that delta_filter_wrapper.py must be installed to run this
tests, maybe this is the issue with other tests?
I can continue looking tomorrow, but if you or someone have some ideas
go ahead.
On Sat, Aug 24, 2024 at 08:05:51PM GMT, ??tienne Mollier wrote:
> Aloha,
>
> I have attempted to bump the version of python-pyani to 0.2.13.1
> but the test suite of the module is giving me many difficulties,
> and I don't expect to sort them all by myself timely. I would
> welcome help from someone more fluent with Python than I am to
> finish the job. The git repository[0] is up to date. Salsa
> CI[1] gives an idea of the test items that are failing at the
> moment.
>
> [0]: https://salsa.debian.org/med-team/python-pyani
> [1]: https://salsa.debian.org/med-team/python-pyani/-/jobs/6176496
>
> Have a nice day, :)
> --
> .''`. Étienne Mollier <emollier@debian.org>
> : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
> `. `' sent from /dev/pts/1, please excuse my verbosity
> `- on air: First Band From Outer Space - Smokin'
--
cheers,
Emmanuel Arias
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⣾⠁⢠⠒⠀⣿⡁ eamanu@debian.org
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