Re: Attempt to upgrade sra-sdk

["Aaron M. Ucko" <ucko@debian.org>]

Andreas Tille <andreas@an3as.eu> writes:

> I've spent some time into the new version of sra-sdk and tried to adapt
> the patches to the new upstream version.

Hi, Andreas, and thanks!

AFAICT, the immediate problem is that label_online_tests.patch refers to
at least one removed or renamed test:

  CMake Error at test/internal/vdb-diff/CMakeLists.txt:42 (set_tests_properties):
    set_tests_properties Can not find test to add properties to:
      Test_VDB_Diff_Check_success

Temporarily disabling this patch will let you focus on compilation
issues for the time being.

Please also bear in mind that upstream maintains this code in
conjunction with ncbi-vdb (lower-level) and ngs-sdk (higher-level), so
it may help to update ncbi-vdb first and you may want to update ngs-sdk
afterwards.

I'll take a closer look when I get a chance.

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu