gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -ffile-prefix-map=/builds/med-team/gmap/debian/output/source_dir=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_sse2-intersect-uint2.o `test -f 'intersect-uint2.c' || echo './'`intersect-uint2.c
intersect-simd.c: In function 'v1':
intersect-simd.c:242:8: warning: implicit declaration of function '_mm_lddqu_si128'; did you mean '_mm_loadu_si128'? [-Wimplicit-function-declaration]
242 | F0 = _mm_lddqu_si128((const __m128i *)(freq));
| ^~~~~~~~~~~~~~~
| _mm_loadu_si128
I don't think upstream tested the SSE2 build recently; I'm looking at this now