On Wed, Nov 23, 2022 at 09:01:40PM +0100, Andreas Tille wrote: > python-cobra It seems like that the interpreter is having trouble referencing the name variable. I tried using getName instead of that which gets the test passing but I'm not very sure if it serves the purpose well. Pushed this change to salsa, but please review. > python-pyani This is because python3-biopython does not vendor shared object libs for python3.11 yet $ apt-file list python3-biopython | grep '_align' ... python3-biopython: /usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so python3-biopython: /usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so There are two ways to fix this: 1. Run tests only for default python3-dev version 2. Re-compile biopython to vendor 3.11 bindings, but this has issues at present due to t-coffee bug. I have pushed something that implements 1.) to salsa, please check. -- Best, Nilesh
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