Bug#1006501: marked as done (ITP: snpsift -- tool to annotate and manipulate genome variants)
Your message dated Sun, 27 Feb 2022 11:00:16 +0000
with message-id <E1nOHHk-0009hO-3T@fasolo.debian.org>
and subject line Bug#1006501: fixed in snpsift 5.1+dfsg2-1
has caused the Debian Bug report #1006501,
regarding ITP: snpsift -- tool to annotate and manipulate genome variants
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1006501: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1006501
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Debian-med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org
* Package name : snpsift
Version : 5.1
Upstream Author : Pablo Cingolani <pcingola@users.sourceforge.net>
* URL : https://pcingola.github.io/SnpEff/ss_introduction/
* License : Expat
Programming Lang: Java
Description : tool to annotate and manipulate genome variants
SnpSift is a toolbox that allows one to filter and manipulate annotated files.
Once the genomic variants have been annotated, one needs to filter them out in
order to find the "interesting / relevant variants". Given the large data
files, this is not a trivial task (e.g. one cannot load all the variants into
XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and
filtering required at this stage in data processing pipelines.
The package will be team-maintained by Debian-med team.
--- End Message ---
--- Begin Message ---
Source: snpsift
Source-Version: 5.1+dfsg2-1
Done: Pierre Gruet <pgt@debian.org>
We believe that the bug you reported is fixed in the latest version of
snpsift, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1006501@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <pgt@debian.org> (supplier of updated snpsift package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 26 Feb 2022 21:33:39 +0100
Source: snpsift
Binary: libsnpsift-java libsnpsift-java-doc snpsift
Architecture: source all
Version: 5.1+dfsg2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Pierre Gruet <pgt@debian.org>
Description:
libsnpsift-java - tool to annotate and manipulate genome variants - lib
libsnpsift-java-doc - Documentation for SnpSift
snpsift - tool to annotate and manipulate genome variants - tool
Closes: 1006501
Changes:
snpsift (5.1+dfsg2-1) unstable; urgency=medium
.
* Initial release (Closes: #1006501)
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