Re: Datasets to design autopkgtests for our packages
Hi Pierre,
On 2022-02-18 17:52, Pierre Gruet wrote:
> To give a bit of context: I am currently writing autopkgtests for
> htsjdk, which is one Java library we maintain in the team. Those
> autopkgtests should test reverse-dependencies to ease upgrades of htsjdk.
>
> When designing such tests, I would need data to run, let's say, artemis
> or igv which process FASTA, or whatever, files.
> Do you have some idea of a place to get data files that can be safely
> included in our packages for such uses? Maybe some website with open data?
It depends whether you need simple protein FASTA sequences or
alignments. You may find simple sequences in PDB, for example [1], go to
"Download Files" and FASTA format is just there. AFAIR, PDB data is
freely distributable.
[1] https://www.rcsb.org/structure/6fti
Best,
Andrius
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