Bug#1005356: marked as done (ITP: rockhopper -- system for analyzing bacterial RNA-seq data)
Your message dated Wed, 16 Feb 2022 11:00:11 +0000
with message-id <E1nKI2d-000IQy-PU@fasolo.debian.org>
and subject line Bug#1005356: fixed in rockhopper 2.0.3+dfsg2-1
has caused the Debian Bug report #1005356,
regarding ITP: rockhopper -- system for analyzing bacterial RNA-seq data
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1005356: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1005356
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Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Debian-med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org
* Package name : rockhopper
Version : 2.0.3
Upstream Author : Brian Tjaden
* URL : https://cs.wellesley.edu/~btjaden/Rockhopper
* License : GPL-3+
Programming Lang: Java
Description : system for analyzing bacterial RNA-seq data
Rockhopper is a comprehensive and user-friendly system for
computational analysis of bacterial RNA-seq data. As input, Rockhopper
takes RNA sequencing reads output by high-throughput sequencing
technology (FASTQ, QSEQ, FASTA, SAM, or BAM files). Rockhopper supports
the following tasks:
* Reference based transcript assembly (when one or more reference
genomes are available)
- Aligning reads to genomes
- Assembling transcripts
- Identifying transcript boundaries and novel transcripts such as
small RNAs
* De novo transcript assembly (when reference genomes are unavailable)
* Normalizing data from different experiments
* Quantifying transcript abundance
* Testing for differential gene expression
* Characterizing operon structures
* Visualizing results in a genome browser
The package will be team-maintained by Debian-med team.
--- End Message ---
--- Begin Message ---
Source: rockhopper
Source-Version: 2.0.3+dfsg2-1
Done: Pierre Gruet <pgt@debian.org>
We believe that the bug you reported is fixed in the latest version of
rockhopper, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1005356@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <pgt@debian.org> (supplier of updated rockhopper package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 12 Feb 2022 13:58:59 +0100
Source: rockhopper
Binary: rockhopper
Architecture: source all
Version: 2.0.3+dfsg2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Pierre Gruet <pgt@debian.org>
Description:
rockhopper - system for analyzing bacterial RNA-seq data
Closes: 1005356
Changes:
rockhopper (2.0.3+dfsg2-1) unstable; urgency=medium
.
* Initial release (Closes: #1005356)
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