Re: igblast accepted - how can it be used to test igdiscover
Steffen Moeller <steffen_moeller@gmx.de> writes:
> Thank you both for your help.
No problem.
> Am 02.08.2022 um 10:48 schrieb Andreas Tille:
[...]
>> Do you have any other hint how to create the main binaries reliably?
Ah, sorry, a closer look indicates that the build system needs
additional hints to find system VDB:
--with-vdb=/usr VDB_INCLUDE=-I/usr/include/ncbi-vdb
> I wanted to see it compile and thus withouted as much as possible in a
> first run to reduce the complexity.
That's fair. FWIW, most of these options have no bearing on the package
anyway and are just artifacts of IgBLAST's origin in a larger tree.
Also, there's one option I'd suggest actively enabling: --with-openmp.
If you specify neither --with-openmp nor --without-openmp, the build
system uses OpenMP on a limited basis, but explicit --with-openmp
enables it across the board, from which (Ig)BLAST generally benefits.
--
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu
Reply to: