Bug#1008128: ITP: gatk-fermilite -- interface to call Heng Li's fermi-lite assembler from Java code

[Pierre Gruet <pgt@debian.org>]

Package: wnpp
Severity: wishlist
Owner: Debian-med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org

* Package name    : gatk-fermilite
  Version         : 1.2.1
  Upstream Author : Broad Institute
* URL             : https://github.com/broadinstitute/gatk-fermilite-jni
* License         : BSD-3-clause
  Programming Lang: Java, C
  Description     : interface to call Heng Li's fermi-lite assembler from Java code

Fml-asm (fermi-lite assembler) is a command-line tool for assembling Illumina
short reads in regions from 100bp to 10 million bp in size, based on the
fermi-lite library.

gatk-fermilite provides a Java library and a shared library to allow one to use
fermilite from Java code.
 
The package will be team-maintained inside Debian-med team. It is needed as a
dependency of the packaging target gatk.