Re: Advice needed: building new gatk-bwamem-jni against another version of bwa

[Pierre Gruet <pgt@debian.org>]

Hi Andrius,

Thanks for looking at my issue.

Le 14/03/2022 à 06:03, Andrius Merkys a écrit :
> Hi Pierre,
>
> On 2022-03-13 16:35, Pierre Gruet wrote:
> > My proposal would be to design a multiple upstream tarball for
> > gatk-bwamem-jni: original one + the sources at the tip of the Apache2
> > branch of bwa. It would build a libbwa.a lib which would not be
> > installed in /usr/lib, but in a private directory of gatk-bwamem-jni.
>
> Quick question. AFAIU, libbwa.a would be statically linked to
> gatk-bwamem-jni binaries. So would there still be a need to install
> libbwa.a anywhere?

Yes this is totally right, my mistake. In fact there would be no 
(alternative) libbwa.a to install, the link to the JNI shared library 
would indeed be static.

Thanks for pointing this out.

> Best,
> Andrius

Best,

--
Pierre