Hi, The new version of racon got released, and I believe I made the adjustments in patches accordingly. However, the build chokes with the log given below. I have linked edlib as needed, and the dependency is also satisfied. The functions mentioned (edlibAlign, edlibAlignmentToCigar etc) are mentioned in /usr/include/edlib.h as well, so I am not sure what is triggering this. All my changes are in salsa. Any help is welcome. Regards, Nilesh [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/home/nilesh/packages/racon/racon/test/data/\" -I/home/nilesh/packages/racon/racon/src -g -O2 -ffile-prefix-map=/home/nilesh/packages/racon/racon=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /home/nilesh/packages/racon/racon/test/racon_test.cpp /usr/bin/c++ -DVERSION=\"1.5.0\" -I/home/nilesh/packages/racon/racon/src -g -O2 -ffile-prefix-map=/home/nilesh/packages/racon/racon=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /home/nilesh/packages/racon/racon/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/home/nilesh/packages/racon/racon=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -lspoa -ledlib -lpthread -lz /usr/bin/ld: lib/libracon.a(overlap.cpp.o): in function `racon::Overlap::align_overlaps(char const*, unsigned int, char const*, unsigned int)': ./obj-x86_64-linux-gnu/./src/overlap.cpp:210: undefined reference to `edlibNewAlignConfig' /usr/bin/ld: ./obj-x86_64-linux-gnu/./src/overlap.cpp:210: undefined reference to `edlibAlign' /usr/bin/ld: ./obj-x86_64-linux-gnu/./src/overlap.cpp:213: undefined reference to `edlibAlignmentToCigar' /usr/bin/ld: ./obj-x86_64-linux-gnu/./src/overlap.cpp:223: undefined reference to `edlibFreeAlignResult' collect2: error: ld returned 1 exit status make[3]: *** [CMakeFiles/racon_exe.dir/build.make:101: bin/racon] Error 1 make[3]: Leaving directory '/home/nilesh/packages/racon/racon/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:116: CMakeFiles/racon_exe.dir/all] Error 2
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