Re: altree bug fixed but autopkgtest causes Segmentation fault (Was: Bug#994474: please update recommends on openblas)
On 17/09/2021 15:40, Vincent Danjean wrote:
I built the package locally, installed it and executed the
debian/tests/run-unit-test manually.
No errors occurred (with gcc from up-to-date unstable, ie
gcc=4:10.2.1-1 and gcc-10=10.3.0-10).
Did you try with gcc from experimental ?
I applied debian patches to upstream where I also fixed a missing
include. Then, I generated a new (upstream) version, updated the Debian
package (fixing the watch file) and upload it.
I cannot push to salsa (yet) because I'm not in the Debian-Med groups
nor in the members of the altree project. I just requested the Debian-Med
group membership on salsa. I'm waiting for approval.
Andreas: can you check if the missing header fix makes autopkg tests
to succeed?
Regards,
Vincent
PS: I made two MR (for master and pristine-tar) if someone wants to see/merge
before I gain write access.
Regards,
Vincent
autopkgtest [12:08:54]: test run-unit-test: [-----------------------
Analyzing file number 1
read done
Starting tree analysis
Starting permutations
/tmp/autopkgtest.BGTBdL/tree/debian/tests/run-unit-test: line 26: 150 Segmentation fault altree -i test.res.log -j nb_cas_control.txt -a -t SNP -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso -q qualitative
autopkgtest [12:08:55]: test run-unit-test: -----------------------]
autopkgtest [12:08:55]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - -
run-unit-test FAIL non-zero exit status 139
I'd love if someone could have a look
Andreas.
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