Re: Building roadrunner from your salsa branch

[B Thomas <balbirthomas@hotmail.com>]

Hi Andreas (and Deb-Med),

> I hope you don't mind that I'm quoting you in public.  

I have no problem. Just that I would have preferred to use a different
email address for mailing lists to keep the spam bots at check.

> Are you sure about this?  I get:

Here is the build error I see (different from yours)

[  9%] Building CXX object source/CMakeFiles/roadrunner-static.dir/rrRoadRunner.cpp.o
cd /home/bt/debian/sysbio/roadrunner/git/roadrunner/obj-x86_64-linux-gnu/source && /usr/bin/c++  -DBUILD_LLVM -DLIBLAX_STATIC -DLIBSBML_STATIC -DLIBSBML_USE_CPP_NAMESPACE -DPOCO_NO_AUTOMATIC_LIBS -DPOCO_STATIC -DSTATIC_LIBSTRUCT -DSTATIC_NLEQ1 -DSTATIC_NLEQ2 -DSTATIC_PUGI -DSTATIC_RR -I/home/bt/debian/sysbio/roadrunner/git/roadrunner -I/home/bt/debian/sysbio/roadrunner/git/roadrunner/third_party -I/usr/include/libxml2 -I/usr/lib/llvm-7/include -I/home/bt/debian/sysbio/roadrunner/git/roadrunner/obj-x86_64-linux-gnu/source -I/home/bt/debian/sysbio/roadrunner/git/roadrunner/source/. -I/usr/include/rr-libstruct -I/usr/include/sbml -I/usr/include/cvode  -g -O2 -fdebug-prefix-map=/home/bt/debian/sysbio/roadrunner/git/roadrunner=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC   -o CMakeFiles/roadrunner-static.dir/rrRoadRunner.cpp.o -c /home/bt/debian/sysbio/roadrunner/git/roadrunner/source/rrRoadRunner.cpp
In file included from /home/bt/debian/sysbio/roadrunner/git/roadrunner/source/rrRoadRunner.cpp:11:
/home/bt/debian/sysbio/roadrunner/git/roadrunner/source/rrRoadRunner.h:5:10: fatal error: rr-libstruct/lsMatrix.h: No such file or directory
 #include "rr-libstruct/lsMatrix.h"
          ^~~~~~~~~~~~~~~~~~~~~~~~~

I was building commit with git sha 183ad2dc76a1a4daa17919f68cdd5c4af64779d8
CommitDate: Tue May 12 16:53:08 2020 +0200. I was building on
Debian/Stable and prefer to stay on it till next release.

> and since I have no solution for this I stopped working on this issue
> (and I admit I nearly forgot this project - thanks for bringing it up to
> my radar again ;-) ).

No problem. Actually I am interested in Debian packages for the
following Tellurium (http://tellurium.analogmachine.org/) (RoadRunner is
one of its dependencies). I will be happy to help in packing both, in
what ever time I can pull out. Let me know how I can help.

> Where did you found that repository?

Here is the where I found the git repo for rr-libstruct

https://github.com/sys-bio/rr-libstruct

rr-libstruct has one problem. It depends on clapack, which as far as I
understand is deprecated. lapacke is now the standard C interface to
lapack. I am thinking of investigating how easy it will be to
migrate it to lapacke (already in debian) and create a pull request
for upstream.

Regards
B Thomas