Re: PIQUE packaging (Was: request for r-cran packages) [correction]
On 20/07/2020 13:03, Andreas Tille wrote:
[...]
OK, just ITPed package. BTW, I was running make in the tests dir and
it ends with:
Analysis finished: Mon Jul 20 13:56:47 2020
Create sativas_GWAS.covar file...
smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
OOPS -i flag not specified at /usr/bin/smartpca line 21.
pique: error - Can't read sativas_GWAS.evec
make: *** [Makefile:29: input] Fehler 255
Hi, Andreas.
I created a pristine Ubuntu-MATE 20.04 VM, installed "med-bio" and
"med-bio-dev" into it, then installed PIQUE from GitHub without any
tar-ball dependencies. The only missing dependency was
"libparallel-forkmanager-perl", which I installed, and then the PIQUE
test ran without error.
Sorry that PIQUE has become so out-of-date and unmaintained. We do use
it a lot under Ubuntu-MATE 18.04, but I'm now upgrading to 20.04 LTS.
I'll update PIQUE on Github and remove the tar-ball dependencies from it
now that everything I need is available in "med-bio" or "med-bio-dev".
Thanks again for your work packaging PIQUE,
Tony.
--
Minke Informatics Limited, Registered in Scotland - Company No. SC419028
Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK)
tel. +44(0)19755 63548 http://minke-informatics.co.uk
mob. +44(0)7985 078324 mailto:tony.travis@minke-informatics.co.uk
Reply to: