Re: RoSA needs sambamba for testing which needs a patch to htslib to build
Am Sa., 4. Juli 2020 um 17:13 Uhr schrieb Andreas Tille <andreas@an3as.eu>:
>
> Hi Steffen,
>
> On Sat, Jul 04, 2020 at 12:53:00PM +0200, Steffen Möller wrote:
> > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=948919
> >
> > please allow that I bring some attention to this bug report. Are there
> > any objections to adopt the patch in guix to htslib also for Debian?
> > This just removes the "static" from cram_to_bam and adds its declaration
> > to a header file.
>
> While I'm not sure whether this helps sambamba (which has a long
> standing build issue which is IMHO related to upgrade of D compiler)
> if you think that's helpful and upstream has no problems with this
> I'm fine with that patch. I've kept John Marshall who once helped
> to have a clean htslib - comments are welcome.
Not sure if there is a new issue by now, but when I was working on
this last, the missing public cram_to_bam symbol was the only
remaining issue that prevented sambamba from building in Debian (and I
heard Sambamba upstream wanted to port away from the internal API, but
that hasn't happened yet).
Cheers,
Matthias
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