Re: RoSA needs sambamba for testing which needs a patch to htslib to build

[Steffen Möller <steffen_moeller@gmx.de>]

On 04.07.20 17:13, Andreas Tille wrote:
> Hi Steffen,
>
> On Sat, Jul 04, 2020 at 12:53:00PM +0200, Steffen Möller wrote:
> > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=948919
> >
> > please allow that I bring some attention to this bug report. Are there
> > any objections to adopt the patch in guix to htslib also for Debian?
> > This just removes the "static" from cram_to_bam and adds its declaration
> > to a header file.
> While I'm not sure whether this helps sambamba (which has a long
> standing build issue which is IMHO related to upgrade of D compiler)
> if you think that's helpful and upstream has no problems with this
> I'm fine with that patch.  I've kept John Marshall who once helped
> to have a clean htslib - comments are welcome.

I just uploaded a new version. The tests need to be worked on, still.
There are tons of these "./test/test_suite.sh: 22: eval: -q: not found"
error messages that I did not chase up, yet.

Best,

Steffen