Re: Packaging "AGAT - Another Gff Analysis Toolkit "

Hi Andreas,

Thanks for the comments.

I guess the problem is that I used

pbuilder create and pdebuild (https://www.debian.org/doc/manuals/maint-guide/build.en.html#pbuilder)

There I could not see the pointed errors.

I will work now with gbp buildpackage and try to fix the problems.

Thanks!!

Best

AndreiR

On October 22, 2020 15:30:06 Andreas Tille <andreas@an3as.eu> wrote:

Hi again,

I tried to fix pristine-tar. You should *not* manually add complete

tarballs there. Also the tarball is *without* the Debian revision - so

the name should be agat_0.5.0.orig.tar.gz (and not

agat_0.5.0-1.orig.tar.gz) Please re-read the recommendations from

MoM and the Debian Med policy. Its finally important that you can

successfully do `gbp buildpackage` - if it works for you to recreate

the tarball it works for others as well.

Regarding the packaging: It contains the unchanged autopkgtest

boilerplate. Please either provide a sensible autopkgtest or remove

the boilerplate debian/tests.

So you know some citation about agat? This would be great. There is

also the Conda ID "agat" which you could specify in

debian/upstream/metadata (see template).

You should also provide a lintian override for

script-with-language-extension lintian warning (there exist a proper

example to do so in the Debian Med template!)

Please also fix the incorrect-path-for-interpreter - just check the

rules file of package sspace or vcftools for example. There are also

some manpage errors mentioned by lintian. Please try to fix these.

Kind regards

Andreas.

On Thu, Oct 22, 2020 at 02:06:47PM +0200, Andrei Rozanski wrote:

Hi Andreas,

Thanks for the replying even in "real life mode" :D

On 10/21/20 10:53 PM, Andreas Tille wrote:

Hi,

Thanks for pointing that out. I have pushed it.

very short notice (I'm in real life mode this week): The pristine-tar

branch is missing agat_0.5.0.orig.tar.gz.

Kind regards

Andreas.

On Wed, Oct 21, 2020 at 06:44:54PM +0200, Andrei Rozanski wrote:

Hello,

I have worked on AGAT (https://salsa.debian.org/med-team/agat). For the

moment, lintian seems fine. The build also looks promising.

I would like to request some help for checking/guidance on what I have done

so far.

Many thanks.

Best,

AndreiR

On Fri, Oct 16, 2020 at 7:41 AM Andrei Rozanski <rozanskide@gmail.com>

wrote:

Hi Andreas,

Thanks for the answer! I will work on it.

On October 16, 2020 07:39:23 Andreas Tille <andreas@an3as.eu> wrote:

Hi Andrei,

On Fri, Oct 16, 2020 at 07:30:11AM +0200, Andrei Rozanski wrote:

> More recently I have tried AGAT - Another Gff Analysis Toolkit

> (https://github.com/NBISweden/AGAT) and found it quite useful in

> general. I

> have failed to find a debian package for it.

>

> Would it be ok for me to try to package it or should I prioritize the

> COVID

> list and do AGAT later?

>

The general rule is: We package what we use. So yes, just go for it.

(May be those who assembled the COVID list did not had this on the

radar?)

Feel free to keep on asking here in case of trouble.

Thanks a lot for your contribution

Andreas.

--

http://fam-tille.de

Best

AndreiR

--

Andrei R

Many thanks !

Best

AndreiR

--

http://fam-tille.de