Re: cct test issue: blast: Error: Unknown argument: "query_gencode"
Hi Aaron,
On Fri, Oct 16, 2020 at 08:44:20AM -0400, Aaron M. Ucko wrote:
> Andreas Tille <andreas@an3as.eu> writes:
>
> > blastn [-h] [-help] [-import_search_strategy filename]
> [...]
> > DESCRIPTION
> > Nucleotide-Nucleotide BLAST 2.10.1+
> [...]
> > Error: Unknown argument: "query_gencode"
>
> Please try simply dropping -query_gencode (and its argument) here --
> because blastn performs direct nucleotide-nucleotide comparisons, it
> doesn't care about genetic codes, and upstream evidently limited this
> flag's use to the one tool for which it would be meaningful: tblastx.
> (Likewise, only tblastn and tblastx support -db_gencode these days.)
>
> Thanks for checking!
Thanks for the nice hint. The funny thing is that
grep -R query_gencode
has no result in cct source code and I have no idea how to suppress
this. I'm busy with real life issues for the next week - so I'd be
happy if someone else could solve that riddle for me.
Kind regards
Andreas.
--
http://fam-tille.de
Reply to: