Re: mCaller - Unicode error - anybody who has encountered this before/having an instant idea?
On Fri, 04 Sep 2020, Steffen Möller wrote:
> File "./mCaller.py", line 59, in distribute_threads
> extract_features(tsvname,refname,read2qual,nvariables,skip_thresh,qual_thresh,modelfile,classifier,0,endline=bytesize,train=train,pos_label=training_pos_dict,base=base,motif=motif,positions_list=positions_list)
> File
> "/home/moeller/git/med-team/mcaller/mcaller-0.0/extract_contexts.py",
> line 123, in extract_features
> model = pickle.load(modfi)
> UnicodeDecodeError: 'ascii' codec can't decode byte 0xb9 in position 1:
> ordinal not in range(128)
I guess pickle produced with python2 ... have a look around e.g.
https://rebeccabilbro.github.io/convert-py2-pickles-to-py3/
--
Yaroslav O. Halchenko
Center for Open Neuroscience http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
WWW: http://www.linkedin.com/in/yarik
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