Re: [RFS] igv 2.6.3
Hi Pierre,
On Tue, Sep 01, 2020 at 10:54:52PM +0200, Pierre Gruet wrote:
> I have worked on the packaging of igv 2.6.3+dfsg, which is in
>
> https://salsa.debian.org/med-team/igv
>
> This igv packaging still relies on its embedded jars. I have solved
> build issues related to gradle, another one linked to the current
> version of htsjdk (solves Grave bug on igv), and had to skip build-time
> tests which required a network access.
> You will see the remaining tests are quite verbose as they output
> information to stderr and stdout, but all are passing.
> I installed and ran the package on my computer (running Testing), it
> seemed to work fine.
I'm running testing as well and I think that's OK.
> I have not packaged the most recent upstream version (2.8.10) as all
> upstream versions > 2.6.3 rely on jars that are downloaded from the
> internet at build time.
Thanks for your helpful analysis.
> It is thus very relevant to package the predependencies of igv -- which
> I have begun, two of them are awaiting sponsorship on Debian Java
> mailing list.
Feel free to ping me in CC - I'm perfectly willing to sponsor packages
also in other teams. I'll check the list right now.
> Thanks in advance for looking at igv and sponsoring it when time permits,
Sponsoring your fine work does not much time and is really important to
me since it solves issues in our packages. BTW, if you might find some
time for artemis - that would be really cool as well since it is
outdated since some time and also needs love.
Thanks again for your effort
Andreas.
--
http://fam-tille.de
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