Hey Charles,
Here is what I do in this circumstance.
1. `quilt pop -a` to remove all patches
2. `quilt push` one patch at a time. If I see that there was any fuzzing, then I do a `quilt refresh` before the next `quilt push`.
3. If a patch does apply cleanly I investigate to see if it should be removed entirely with `quilt delete patchname && git rm debian/patches/patchname` or fixed via `quilt push -f` and editing the files indicated in one terminal while reviewing the corresponding `*.rej` files in another terminal. `quilt refresh` when I'm done fixing the patch, then continue with step 2
4. When I'm done, I `dch "Refreshed patches" && debcommit -a` or similar
Maybe others have a better method, I'm curious to hear from them as well.
Cheers,