Fwd: Bug#954777: ITP: augur -- pipeline components for real-time virus analysis
Hi folks,
I added this COVID-19 relevant ITP.
Please give more input which of our packages are relevant in this field.
Kind regards
Andreas.
----- Forwarded message from Andreas Tille <tille@debian.org> -----
Date: Mon, 23 Mar 2020 12:16:05 +0100
From: Andreas Tille <tille@debian.org>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: Bug#954777: ITP: augur -- pipeline components for real-time virus analysis
X-Debian-PR-Message: report 954777
X-Debian-PR-Package: wnpp
X-Debian-PR-Keywords:
Package: wnpp
Severity: wishlist
Subject: ITP: augur -- pipeline components for real-time virus analysis
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist
* Package name : augur
Version : 6.4.2
Upstream Author : Trevor Bedford and Richard Neher
* URL : https://github.com/nextstrain/augur
* License : AGPL-3+
Programming Lang: Python
Description : pipeline components for real-time virus analysis
The nextstrain project is an attempt to make flexible informatic
pipelines and visualization tools to track ongoing pathogen evolution as
sequence data emerges. The nextstrain project derives from nextflu,
which was specific to influenza evolution.
.
nextstrain is comprised of three components:
.
* fauna: database and IO scripts for sequence and serological data
* augur: informatic pipelines to conduct inferences from raw data
* auspice: web app to visualize resulting inferences
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/augur
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